RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TRIM9	3	-0.990	0.950
CTTNBP2	2	0.570	0.140
MTMR2	1	-1.600	3.150
CDK16	1	-1.400	2.950
CDK16	1	-1.400	2.950
CDK16	1	-1.400	2.950				-0.510	0.013
SYNGR2	1	-1.150	1.010				-1.030	-0.298
DLG4	1	-0.020	0.320	1.552			0.102	0.488
SNAPIN	1	-2.700	4.770
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
CADM1	1	-0.550	0.210		1.891		-0.186	0.114
SYPL1	0	-0.600	1.070				0.482	0.154
DNAJC5	0	0.070	0.170				-0.404	-0.209
DMXL2	0	1.320	-0.830
RABAC1	0	1.300	-0.820
GIPC1	0	0.050	-0.100
SEPT6	0	-0.330	0.650
PPT1	0	1.320	-0.730
STON2	0
RAB3C	0	-1.560	1.830				-0.216
BRSK1	0	0.330	-0.040
STXBP5	0	-0.920	1.170
MFF	0	-1.140	1.810
MFF	0	-1.140	1.810				-2.082	0.500
RAB3B	0	-0.490	0.220
RAB3B	0	-0.490	0.220				-0.216
SEPT5	0	0.240	-0.290
RAB11B	0	-0.130	-0.140	0.324			0.697	0.458
RAB11B	0	-0.130	-0.140
LRRK2	0	0.530	-0.620	-0.240

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
BRSK1	Phosphorylation	S489	-0.354	-0.198	_NSFLGS(ph)PR_
CDK16	Phosphorylation	S110		0.566	_RQLS(ph)MTLR_
CDK16	Phosphorylation	S176	-0.089	-0.530	_M(ox)GS(ph)DGESDQASATSSDEVQS(ph)PVR_
CDK16	Phosphorylation	S193	-0.305	-0.461	_MGS(ph)DGESDQASATSSDEVQS(ph)PVR_
CDK16	Phosphorylation	S208	0.508	0.023	_KIS(ph)TEDINK_
CDK16	Phosphorylation	T209		0.502	_KIS(ph)TEDINKR_
CDK16	Phosphorylation	S217	-0.051	0.003	_RLS(ph)LPADIR_
CDK16	Phosphorylation	S236	-0.603	-0.685	_LTLNS(ph)PIFDKPLSR_
CDK16	Phosphorylation	S236		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK16	Ubiquitylation	K243		0.512	_EVSLLK(gl)DLK_
CDK16	Phosphorylation	S249		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK16	Phosphorylation	S251	0.931	0.143	_RVS(ph)LSEIGFGK_
CDK16	Phosphorylation	S253		-0.670	_RVSLS(ph)EIGFGK_
CDK16	Phosphorylation	S385		0.649	_HSSIS(ph)PVRLPLNSSLGAELSR_
CDK16	Phosphorylation	S420	0.004	-0.202	_ES(ph)KGSPVFLPR_
CDK16	Phosphorylation	S423	-0.155	-0.297	_GS(ph)PVFLPR_
CDK16	Phosphorylation	T514	0.364	0.570	_DSKPIALKEEIVT(ph)PK_
CDK16	Phosphorylation	S681	-2.532	-2.051	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK16	Phosphorylation	S685		-2.729	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK16	Phosphorylation	T692	-0.765	-1.849	_AIT(ph)PPQQPYK_
CDK16	Phosphorylation	S1082	-1.661	-0.980	_KETTSGTSTEPVKNS(ph)SPAPPQPAPGK_
CDK16	Phosphorylation	S1083	-1.093	-1.330	_NSS(ph)PAPPQPAPGK_
CDK16	Phosphorylation	T1244		-0.956	_RT(ph)PTMPQEEAAACPPHILPPEK_
CTTNBP2	Phosphorylation	S1524	5.483	5.927	_LSLGS(ph)DDEADLVK_
DLG4	Phosphorylation	S102	-1.455		_SKPSEPIQPVNTWEISSLPSSTVTSETLPSSLS(ph)PSVEK_
DLG4	Phosphorylation	T115	-0.707	-1.378	_YQDEDT(ph)PPQEHISPQITNEVIGPELVHVSEK_
DLG4	Phosphorylation	S122		-1.073	_YQDEDTPPQEHIS(ph)PQITNEVIGPELVHVSEK_
DLG4	Phosphorylation	S158		0.773	_NLSEIENVHGFVSHSHIS(ph)PIK_
DLG4	Ubiquitylation	K321	1.264	1.435	_IMEIK(gl)LIK_
DLG4	Ubiquitylation	K361	0.180		_IIEGGAAHK(gl)DGK_
DLG4	Ubiquitylation	K452	-0.704		_YSPVSK(gl)AVLGDDEITREPR_
DLG4	Ubiquitylation	K556	0.105		_FEAK(gl)IHDLR_
DLG4	Phosphorylation	S573	0.697		_EQM(ox)M(ox)NSSISSGS(ph)GSLR_
DLG4	Phosphorylation	S575	0.255	0.729	_EQMMNSSISSGSGS(ph)LR_
DLG4	Ubiquitylation	K843	1.259		_SMENIMEMNK(gl)R_
DMXL2	Phosphorylation	S1857	-0.503	-0.157	_NLAS(ph)PEGTLATLGLK_
DNAJC5	Phosphorylation	S8		0.726	_S(ph)LSTSGESLYHVLGLDK_
DNAJC5	Phosphorylation	S10	0.960	0.885	_SLS(ph)TSGESLYHVLGLDK_
DNAJC5	Phosphorylation	T11		0.908	_SLST(ph)SGESLYHVLGLDK_
DNAJC5	Ubiquitylation	K33	1.192	0.996	_NATSDDIKK(gl)SYR_
DNAJC5	Ubiquitylation	K72	-0.526	1.020	_EINNAHAILTDATK(gl)R_
GIPC1	Ubiquitylation	K80	0.463		_IEGFTNVK(gl)ELYGK_
GIPC1	Ubiquitylation	K199	-0.691	-0.589	_LLK(gl)ELPR_
GIPC1	Ubiquitylation	K210		-0.064	_TFTLK(gl)LTEPR_
MFF	Phosphorylation	S29	-0.273	0.074	_NDS(ph)LVTPSPQQAR_
MFF	Phosphorylation	T137	-0.178	0.023	_VLTLSERPLDFLDLERPPT(ph)TPQNEEIR_
MFF	Phosphorylation	T138	-0.178	-0.038	_VLTLSERPLDFLDLERPPT(ph)TPQNEEIR_
MTMR2	Phosphorylation	S58	0.107	0.436	_SASVVSSDSISTSADNFS(ph)PDLR_
PPT1	Ubiquitylation	K174		-0.445	_TLNAGAYSK(gl)VVQER_
PPT1	Ubiquitylation	K224		1.077	_NLMALKK(gl)_
PPT1	Ubiquitylation	K253		0.222	_SGQAK(gl)ETIPLQETSLYTQDR_
RAB11B	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11B	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11B	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB3B	Ubiquitylation	K8	0.091	0.366	_(ac)ASVTDGK(gl)TGVK_
RAB3B	Phosphorylation	S190		1.210	_MSDS(ph)LDTDPSMLGSSK_
RAB3B	Ubiquitylation	K202	-0.287	0.224	_MSDSLDTDPSMLGSSK(gl)NTR_
RABAC1	Ubiquitylation	K5	-2.308	-1.237	_(ac)AAQK(gl)DQQK(gl)DAEAEGLSGTTLLPK_
RABAC1	Ubiquitylation	K9	-2.234	-1.882	_DQQK(gl)DAEAEGLSGTTLLPK_
SEPT5	Phosphorylation	S375	-1.147		_M(ox)ES(ph)PIPILPLPTPDAETEK_
SEPT6	Ubiquitylation	K172		-0.228	_SLDLVTMKK(gl)_
SEPT6	Ubiquitylation	K191		-0.227	_ADAISK(gl)SELTK_
SEPT6	Ubiquitylation	K196	-1.431	0.171	_SELTK(gl)FK_
SEPT6	Ubiquitylation	K337		0.431	_RNEFLGELQK(gl)_
SEPT6	Ubiquitylation	K426	0.968		_K(gl)NNPWLCTE_
SNAPIN	Phosphorylation	T14	0.785	0.681	_(ac)AGAGSAAVSGAGT(ph)PVAGPTGR_
SNAPIN	Phosphorylation	S133	-0.868		_AM(ox)LDSGIYPPGS(ph)PGK_
SNAPIN	Ubiquitylation	K136	0.295		_AMLDSGIYPPGSPGK(gl)_
STON2	Phosphorylation	S314		-0.976	_TPS(ph)VTEAPPWR_
STXBP5	Phosphorylation	S723	0.003	0.071	_KLS(ph)LPTDLKPDLDVK_
SYNGR2	Ubiquitylation	K10	0.257	1.775	_(ac)MESGAYGAAK(gl)AGGSFDLRR_
TRIM9	Phosphorylation	T41	2.861	2.803	_NILVQT(ph)PESESPQSHR_
TRIM9	Phosphorylation	S46	-0.090	0.152	_NILVQTPESES(ph)PQSHR_
TRIM9	Phosphorylation	S49	-0.049		_NILVQTPESESPQS(ph)HR_
TRIM9	Ubiquitylation	K359		1.745	_DQISHCTVK(gl)LR_