RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPA1	6	0.500	0.350	3.133	3.046	0.303	1.770	2.112
RFC1	3	2.530	-1.230		0.635	1.060	1.028	0.826
RPA2	3	-1.830	3.700				1.524
RPA2	3	-1.830	3.700	2.592
TOP2B	1	0.830	-0.650	-1.137			0.859	0.666
POLE2	1	2.560	-1.150
TOP2A	1	-1.940	3.540
TOP2A	1	-1.940	3.540	-1.993			0.211	0.211
MCMBP	1	-1.950	3.930	-0.958
BAZ1A	1	1.600	-0.840	0.255	0.401	0.236	0.064	0.088
REV3L	0	-0.700	0.890
PNKP	0	1.170	-0.260	-1.642			0.133	0.861
POLD3	0			-0.343
ORC6	0	0.840	-0.710
POLD2	0	-0.020	0.200				0.123
TFAM	0	1.980	-1.290		0.204	0.244	0.179	0.349
CDK2AP1	0	-0.720	0.500		-0.120	0.651
CDK2AP1	0	-0.720	0.500	0.267
HELB	0	1.030	-0.690
RPAIN	0
POLG	0	1.190	-0.550		-1.116		-0.380	0.081

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BAZ1A	Ubiquitylation	K387	2.679		_K(gl)YVEYLK_
BAZ1A	Ubiquitylation	K598	-0.245	1.101	_LSNPSLVK(gl)K_
BAZ1A	Ubiquitylation	K599		0.354	_LSNPSLVKK(gl)_
BAZ1A	Phosphorylation	T731	0.334	0.083	_ELDQDMVT(ph)EDEDDPGSHK_
BAZ1A	Ubiquitylation	K973	-0.227	-0.485	_SSNAYDPSQMCAEK(gl)QLELR_
BAZ1A	Phosphorylation	S1019	0.477	0.773	_YELLS(ph)EENKENGIIK_
BAZ1A	Phosphorylation	S1283	0.833	0.346	_LSSSFS(ph)SR_
BAZ1A	Phosphorylation	S1413	-0.574	-0.355	_RQS(ph)PEPSPVTLGR_
BAZ1A	Phosphorylation	S1546	-0.396		_LGLHVTPSNVDQVS(ph)TPPAAK_
BAZ1A	Phosphorylation	T1547	-0.504	-0.584	_LGLHVTPSNVDQVST(ph)PPAAK_
HELB	Phosphorylation	S967	-0.401	-0.259	_LSSSGAPPADFPS(ph)PR_
HELB	Phosphorylation	S1048		0.877	_RTCGVNDDES(ph)PSK_
HELB	Phosphorylation	S1058		0.701	_IFMVGES(ph)PQVSSR_
MCMBP	Ubiquitylation	K37	0.753		_KVIEYFK(gl)EK_
MCMBP	Ubiquitylation	K39	0.644	0.390	_VIEYFKEK(gl)_
MCMBP	Phosphorylation	S154	0.310	0.457	_VS(ph)PSTSYT(ph)PSR_
MCMBP	Phosphorylation	S156		0.458	_VSPS(ph)TSYTPSR_
MCMBP	Phosphorylation	T160	-0.259	-0.693	_VS(ph)PSTSYT(ph)PSR_
MCMBP	Phosphorylation	S298	-0.553	-0.429	_VHS(ph)PPASLVPR_
MCMBP	Ubiquitylation	K436	-0.059	-0.810	_FIPHK(gl)DYTANR_
MCMBP	Ubiquitylation	K621	0.439		_AK(gl)QLESLRR_
ORC6	Ubiquitylation	K169		0.158	_MVATSGVKK(gl)_
ORC6	Phosphorylation	T195	-1.091	-0.575	_IGQQVDREPGDVAT(ph)PPRK_
PNKP	Phosphorylation	T118	-2.016	-2.084	_TPESQPDT(ph)PPGTPLVSQDEK_
PNKP	Ubiquitylation	K226	0.178		_GK(gl)LPAEEFK_
POLD2	Phosphorylation	S15		-1.104	_AHTLLS(ph)PPSANNATFAR_
POLD2	Ubiquitylation	K81		-0.936	_AQQHWGSGVGVKK(gl)_
POLD2	Ubiquitylation	K145		0.215	_LK(gl)GTIDVSK_
POLD2	Ubiquitylation	K267	-0.443	-0.428	_K(gl)TQAASVEAVK_
POLD3	Phosphorylation	S307	0.831	0.828	_VALS(ph)DDETKETENMR_
POLE2	Ubiquitylation	K15	0.263	-0.418	_ALSAFK(gl)LR_
POLE2	Ubiquitylation	K339		-0.257	_NQVQALK(gl)DSLK_
POLE2	Ubiquitylation	K523		-1.031	_TVEDSK(gl)LQGF_
POLG	Ubiquitylation	K371		-2.064	_LYVGGPPLEK(gl)EPR_
POLG	Ubiquitylation	K990		-1.545	_AQQMYAATK(gl)GLR_
REV3L	Phosphorylation	S1724	0.363	0.417	_SGTLS(ph)PEIFEK_
RFC1	Phosphorylation	S156	-0.050	0.188	_NKPLS(ph)PIK_
RFC1	Phosphorylation	T161	2.131	1.586	_NKPLS(ph)PIKLT(ph)PTSVLDYFGTGSVQR_
RFC1	Phosphorylation	T163		1.551	_NKPLS(ph)PIKLTPT(ph)SVLDYFGTGSVQR_
RFC1	Phosphorylation	S190	2.756	2.241	_ELS(ph)QNTDESGLNDEAIAK_
RFC1	Ubiquitylation	K240		0.991	_TLAMLDEEPKTKK(gl)_
RFC1	Ubiquitylation	K271	0.551		_VK(gl)TAQVSDERK_
RFC1	Phosphorylation	S368	0.431	0.440	_KESVS(ph)PEDSEK_
RFC1	Ubiquitylation	K436	-0.227		_YGGK(gl)VTGNVSK_
RFC1	Ubiquitylation	K498	0.781		_SKYEIAVETEMK(gl)K_
RFC1	Ubiquitylation	K499	0.781		_SKYEIAVETEMK(gl)K_
RPA1	Ubiquitylation	K163	2.827	4.085	_AYGASK(gl)TFGK_
RPA1	Ubiquitylation	K167	3.009	3.243	_TFGK(gl)AAGPSLSHTSGGTQSK_
RPA1	Ubiquitylation	K183	0.925		_AAGPSLSHTSGGTQSK(gl)VVPIASLTPYQSK_
RPA1	Ubiquitylation	K263	-1.803		_GTLK(gl)IANK_
RPA1	Ubiquitylation	K267	2.751		_IANK(gl)QFTAVK_
RPA1	Ubiquitylation	K331	3.112	4.066	_SYEDATK(gl)ITVR_
RPA1	Ubiquitylation	K410	2.458		_SLSVLSSSTIIANPDIPEAYK(gl)LR_
RPA1	Ubiquitylation	K489	0.465	2.335	_K(gl)VIDQQNGLYR_
RPA1	Ubiquitylation	K588	-0.055		_IK(gl)ATVMDVKPVDYR_
RPA1	Ubiquitylation	K595	1.201		_ATVMDVK(gl)PVDYR_
RPA2	Ubiquitylation	K85	0.693		_HAEK(gl)APTNIVYK_
RPA2	Ubiquitylation	K235	1.339		_NQLK(gl)HMSVSSIK_
RPAIN	Phosphorylation	S4	1.043	0.550	_(ac)AES(ph)LRSPR_
RPAIN	Phosphorylation	S7	0.125	0.504	_(ac)AESLRS(ph)PR_
RPAIN	Ubiquitylation	K22		-0.219	_LVGSPPWK(gl)EAFR_
TFAM	Ubiquitylation	K76	-1.169		_AQNPDAK(gl)TTELIR_
TFAM	Phosphorylation	S193	1.208	1.236	_NLS(ph)DSEKELYIQHAK_
TFAM	Phosphorylation	S195	0.801	1.180	_NLSDS(ph)EKELYIQHAK_
TOP2A	Phosphorylation	S4	-0.623	-0.424	_(ac)M(ox)EVS(ph)PLQPVNENM(ox)QVNK_
TOP2A	Ubiquitylation	K17	-0.250		_(ac)MEVSPLQPVNENMQVNK(gl)IKK_
TOP2A	Ubiquitylation	K96		0.284	_IFDEILVNAADNK(gl)QR_
TOP2A	Ubiquitylation	K131	0.553	-0.638	_GIPVVEHK(gl)VEK_
TOP2A	Ubiquitylation	K386	-2.203		_ENMTLQPK(gl)SFGSTCQLSEK_
TOP2A	Ubiquitylation	K397	0.214	0.360	_SFGSTCQLSEK(gl)FIK_
TOP2A	Ubiquitylation	K426		-0.502	_AQVQLNKK(gl)_
TOP2A	Ubiquitylation	K489	-0.029	0.171	_GK(gl)ILNVR_
TOP2A	Ubiquitylation	K520		-0.260	_IVGLQYKK(gl)_
TOP2A	Ubiquitylation	K529	0.862	0.065	_NYEDEDSLK(gl)TLR_
TOP2A	Ubiquitylation	K614		-0.287	_YYK(gl)GLGTSTSK_
TOP2A	Ubiquitylation	K622		-0.581	_GLGTSTSK(gl)EAK_
TOP2A	Ubiquitylation	K632	-0.171	-0.248	_EYFADMK(gl)R_
TOP2A	Ubiquitylation	K655	-0.091	-0.407	_YSGPEDDAAISLAFSK(gl)K_
TOP2A	Ubiquitylation	K656	-0.091	-0.441	_YSGPEDDAAISLAFSKK(gl)_
TOP2A	Ubiquitylation	K723		-1.207	_SIPSMVDGLK(gl)PGQR_
TOP2A	Ubiquitylation	K1088		0.061	_GYDSDPVK(gl)AWK_
TOP2A	Phosphorylation	S1142	0.072	0.040	_VPDEEENEES(ph)DNEKETEK_
TOP2A	Ubiquitylation	K1159	-0.411	-0.659	_EQELDTLK(gl)R_
TOP2A	Ubiquitylation	K1199	-0.674	-1.759	_EKQDEQVGLPGKGGK(gl)_
TOP2A	Phosphorylation	S1249	-0.907	-0.546	_TQMAEVLPS(ph)PR_
TOP2A	Phosphorylation	S1283	0.168	0.028	_NENTEGS(ph)PQEDGVELEGLK_
TOP2A	Phosphorylation	S1411	0.232	-0.105	_S(ph)VVSDLEADDVK_
TOP2A	Phosphorylation	S1414	0.884	0.877	_SVVS(ph)DLEADDVK_
TOP2A	Phosphorylation	S1429	-1.415	-2.977	_GSVPLSS(ph)SPPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	S1430		-1.317	_GSVPLSSS(ph)PPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	T1434	-1.348		_GSVPLSSSPPAT(ph)HFPDETEITNPVPK_
TOP2A	Phosphorylation	S1506		-0.384	_RKPS(ph)TSDDSDSNFEK_
TOP2B	Ubiquitylation	K205		0.226	_FTVETACK(gl)EYK_
TOP2B	Ubiquitylation	K221		-0.165	_QTWMNNMMK(gl)TSEAK_
TOP2B	Ubiquitylation	K373		-0.347	_AGVSVK(gl)PFQVK_
TOP2B	Ubiquitylation	K412		-0.274	_SFGSK(gl)CQLSEK_
TOP2B	Ubiquitylation	K550		0.643	_SYDDAESLK(gl)TLR_
TOP2B	Ubiquitylation	K643		-0.133	_GLGTSTAK(gl)EAK_
TOP2B	Ubiquitylation	K646		0.051	_EAK(gl)EYFADMER_
TOP2B	Ubiquitylation	K676		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K677		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K1079		0.700	_FILEK(gl)IQGK_
TOP2B	Ubiquitylation	K1227		-0.462	_K(gl)LQLEETMPSPYGR_
TOP2B	Ubiquitylation	K1250		-0.673	_RIIPEITAM(ox)K(gl)ADASK_
TOP2B	Phosphorylation	S1400	-0.221	-0.192	_VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1403	-0.017	-0.156	_VKASPIT(ph)NDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	S1413	-0.430	-0.661	_ASPITNDGEDEFVPS(ph)DGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1422	-0.362		_VKAS(ph)PITNDGEDEFVPSDGLDKDEYT(ph)FSPGK_
TOP2B	Phosphorylation	S1424	-1.672	-1.441	_ASPITNDGEDEFVPSDGLDKDEYTFS(ph)PGK_
TOP2B	Phosphorylation	S1454		1.291	_KSQDFGNLFSFPSYS(ph)QK_
TOP2B	Phosphorylation	S1466	-0.324	-0.202	_FDS(ph)NEEDSASVFSPSFGLK_
TOP2B	Phosphorylation	S1552	2.808		_ASGS(ph)ENEGDYNPGRK_
TOP2B	Phosphorylation	S1581	-0.797	-1.005	_KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR_