RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PLXNA3	1	-0.130	0.400
SEMA4C	1	-1.890	3.770
PLXNA2	0	-1.160	1.870				0.107	0.180
PLXNA2	0	1.880	-0.800				0.107	0.180
ATRN	0	0.130	-0.430				-0.905	-0.301
SEMA6A	0	0.490	0.020
ZDHHC8	0	1.290	-0.730
ZDHHC2	0	-0.150	1.060
MET	0	-0.010	-0.330
PLXNA1	0	0.330	0.040	-0.130			0.142	0.555
ITGB6	0	-0.450	0.870				1.047	0.718
ITGB1	0	0.390	-0.650				0.101	-0.036
SEMA3D	0	-1.140	1.290
ZDHHC5	0	-0.740	0.500
PTTG1IP	0	-1.290	1.590
SEMA4B	0	0.370	-0.850
SEMA4D	0	-0.540	0.790
SEMA4D	0	0.260	-0.350
PLXNB2	0	1.170	-1.050				1.011	0.828

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATRN	Ubiquitylation	K1418	-0.525		_K(gl)QQPPAQPGTCI_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
MET	Ubiquitylation	K962	0.146		_QIK(gl)DLGSELVR_
MET	Phosphorylation	S988	0.064		_S(ph)VSPTTEM(ox)VSNESVDYR_
MET	Phosphorylation	S990	0.192	-0.105	_SVS(ph)PTTEM(ox)VSNESVDYR_
MET	Phosphorylation	T992	0.501	-0.048	_SVSPT(ph)TEMVSNESVDYR_
MET	Phosphorylation	S997		0.285	_S(ph)VSPTTEMVS(ph)NESVDYR_
PLXNA2	Ubiquitylation	K1272	0.103		_ENDLTLK(gl)R_
PLXNA3	Ubiquitylation	K622		2.255	_LQLLSK(gl)ETGVR_
PLXNA3	Ubiquitylation	K1328	-1.042	-1.740	_ELDTPPNVEK(gl)ALR_
PLXNB2	Ubiquitylation	K76		0.452	_LQLEQQVATGPALDNK(gl)K_
PLXNB2	Ubiquitylation	K77		0.452	_LQLEQQVATGPALDNK(gl)K_
PLXNB2	Ubiquitylation	K747		0.202	_SYGK(gl)NIDSK_
PLXNB2	Ubiquitylation	K1442		-0.119	_GPVDAVQK(gl)K_
PLXNB2	Ubiquitylation	K1443		-0.119	_GPVDAVQK(gl)K_
PLXNB2	Ubiquitylation	K1738		-0.751	_DSPSNK(gl)LLYAK_
PTTG1IP	Ubiquitylation	K164	-0.439		_K(gl)YGLFKEENPYAR_
PTTG1IP	Ubiquitylation	K169	-0.323	0.518	_YGLFK(gl)EENPYAR_
SEMA3D	Phosphorylation	S660		-11.761	_SLQKKDS(ph)GMYYCK_
SEMA4B	Ubiquitylation	K745		0.831	_NSMK(gl)VFLK_
SEMA4B	Ubiquitylation	K749	0.812		_VFLK(gl)QGECASVHPK_
SEMA4B	Phosphorylation	S830	0.208	0.198	_LGS(ph)EIRDSVV_
SEMA4C	Ubiquitylation	K481		-1.114	_SLVLSQSK(gl)K_
SEMA4C	Ubiquitylation	K482		-1.114	_SLVLSQSK(gl)K_
SEMA4D	Ubiquitylation	K784	0.913	1.205	_SALLIGKK(gl)_
SEMA4D	Ubiquitylation	K857	0.832		_DKPFDVK(gl)CELK_
SEMA6A	Ubiquitylation	K259		-0.265	_VAQVCK(gl)NDMGGSQR_
ZDHHC2	Ubiquitylation	K326	-0.414		_NLENHQFPAK(gl)PLR_
ZDHHC2	Ubiquitylation	K351	0.137		_ESQSHLLTDSQSWTESSINPGK(gl)CK_
ZDHHC5	Ubiquitylation	K97	-0.836		_TVEIK(gl)GIQVR_
ZDHHC5	Ubiquitylation	K224	-0.661	0.509	_TTNEQVTGK(gl)FR_
ZDHHC5	Phosphorylation	S380	0.554	0.592	_GDS(ph)LKEPTSIAESSR_
ZDHHC5	Phosphorylation	S406	-0.118	-0.415	_SEPSLEPES(ph)FRSPTFGK_
ZDHHC5	Phosphorylation	T411	-0.288	-0.365	_SEPSLEPESFRSPT(ph)FGK_
ZDHHC5	Phosphorylation	S425	-0.265	0.016	_SFHFDPLSSGS(ph)R_
ZDHHC5	Ubiquitylation	K457	-0.616		_SEGTTSTSYK(gl)SLANQTR_
ZDHHC5	Phosphorylation	T524		-2.389	_LVPTGPT(ph)HREPSPVR_
ZDHHC5	Phosphorylation	S554	-2.140	-1.638	_LLRQS(ph)PPLPGREEEPGLGDSGIQSTPGSGHAPR_
ZDHHC5	Phosphorylation	S621	-0.798	-0.660	_GVGS(ph)PEPGPTAPYLGR_
ZDHHC5	Phosphorylation	S682		-1.277	_SLGS(ph)ASPGPGQPPLSS(ph)PTR_
ZDHHC5	Phosphorylation	S684		-0.565	_SLGSAS(ph)PGPGQPPLSS(ph)PTR_
ZDHHC5	Phosphorylation	S693	-1.009	-0.854	_SLGSASPGPGQPPLS(ph)SPTR_
ZDHHC5	Phosphorylation	S694	-0.793	-0.798	_SLGSASPGPGQPPLSS(ph)PTR_
ZDHHC8	Ubiquitylation	K224	-0.661	0.509	_TTNEQVTGK(gl)FR_