RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PPIE	2	-2.470	3.680	0.176			-1.635	-1.146
SRPK1	2	-2.020	3.440
SRPK1	2	-2.020	3.440		-0.227	0.204
SRPK1	2	-2.020	3.440	1.541			-0.249	-0.327
VAPB	2	1.440	-0.660				0.042	0.495
VAPB	2	1.440	-0.660			-2.551	0.014	0.056
PPIA	2	4.080	-1.410	0.241	1.212	-1.216	0.426	-0.190
PPIF	1	-1.500	1.620		2.485	0.018	1.294	0.696
SRPK3	1	-0.520	0.710	1.541			-0.249	-0.327
TOP2A	1	-1.940	3.540
TOP2A	1	-1.940	3.540	-1.993			0.211	0.211
ADAR	1	-0.700	1.260	-0.595	-2.524	-1.253	-1.530	-0.195
ADAR	1	-0.700	1.260		0.674			-0.016
PPID	1	-1.370	2.540	0.555			-0.303	-0.018
PPIAL4D	1			0.241	1.212	-1.216	0.426	-0.190
SRPK2	0	-0.090	0.510					-0.634
TARBP2	0	1.300	-0.480
PPIH	0			-0.289	-0.626	-0.300	0.083	0.239
RAD23A	0	-0.070	0.060
RAD23A	0	-0.070	0.060

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADAR	Ubiquitylation	K427	-0.338		_NTNSVPETAPAAIPETK(gl)R_
ADAR	Phosphorylation	T644	2.146	1.082	_TAESQT(ph)PTPSATSFFSGK_
ADAR	Phosphorylation	S657		0.046	_S(ph)PVTTLLECMHK_
ADAR	Ubiquitylation	K680	-0.527		_LLSK(gl)EGPAHEPK_
ADAR	Ubiquitylation	K841	1.158		_VLIGENEK(gl)AER_
ADAR	Phosphorylation	S866		0.195	_TMLLLS(ph)RSPEAQPK_
ADAR	Ubiquitylation	K987	-0.367		_DSIFEPAK(gl)GGEK_
ADAR	Ubiquitylation	K991	-0.367		_DSIFEPAK(gl)GGEK_
ADAR	Ubiquitylation	K1158	1.002	0.569	_VSIYDSK(gl)R_
PPIA	Ubiquitylation	K28	0.396		_VSFELFADK(gl)VPK_
PPIA	Ubiquitylation	K44	0.553	0.832	_ALSTGEK(gl)GFGYK_
PPIA	Ubiquitylation	K49	0.505	0.774	_GFGYK(gl)GSCFHR_
PPIA	Ubiquitylation	K82	0.354	2.128	_SIYGEK(gl)FEDENFILK_
PPIA	Ubiquitylation	K125	0.268	0.377	_TEWLDGK(gl)HVVFGK_
PPIA	Ubiquitylation	K131	0.609	-0.067	_HVVFGK(gl)VK_
PPIA	Ubiquitylation	K133	0.034	0.019	_VK(gl)EGMNIVEAMER_
PPIA	Ubiquitylation	K155	0.233		_K(gl)ITIADCGQLE_
PPIAL4D	Ubiquitylation	K28	0.396		_VSFELFADK(gl)VPK_
PPIAL4D	Ubiquitylation	K44	0.553	0.832	_ALSTGEK(gl)GFGYK_
PPIAL4D	Ubiquitylation	K49	0.505	0.774	_GFGYK(gl)GSCFHR_
PPIAL4D	Ubiquitylation	K82	0.354	2.128	_SIYGEK(gl)FEDENFILK_
PPIAL4D	Ubiquitylation	K125	0.268	0.377	_TEWLDGK(gl)HVVFGK_
PPIAL4D	Ubiquitylation	K131	0.609	-0.067	_HVVFGK(gl)VK_
PPIAL4D	Ubiquitylation	K133	0.034	0.019	_VK(gl)EGMNIVEAMER_
PPIAL4D	Ubiquitylation	K155	0.233		_K(gl)ITIADCGQLE_
PPID	Ubiquitylation	K285	0.088		_LQPIALSCVLNIGACKLK(gl)_
PPIE	Ubiquitylation	K83	-0.219		_VNLAK(gl)PMR_
PPIF	Ubiquitylation	K190	-0.831		_KIESFGSK(gl)SGR_
PPIH	Ubiquitylation	K101	-0.084	-0.652	_GPFADENFK(gl)LR_
RAD23A	Ubiquitylation	K33	-0.058	0.710	_TLQQQTFK(gl)IR_
RAD23A	Ubiquitylation	K43	-0.655	0.490	_IRMEPDETVK(gl)VLK_
RAD23A	Ubiquitylation	K48	-0.793	-0.524	_VLKEK(gl)IEAEK_
RAD23A	Ubiquitylation	K53	-1.008		_IEAEK(gl)GRDAFPVAGQK_
RAD23A	Ubiquitylation	K64	-0.788	-0.325	_GRDAFPVAGQK(gl)LIYAGK_
RAD23A	Ubiquitylation	K70	-0.718	0.049	_LIYAGK(gl)ILSDDVPIRDYR_
RAD23A	Ubiquitylation	K86	0.305	1.081	_IDEK(gl)NFVVVMVTK_
RAD23A	Ubiquitylation	K97	0.761	0.681	_NFVVVMVTKTK(gl)_
RAD23A	Phosphorylation	S125	-0.022	0.064	_EDKSPS(ph)EESAPTTSPESVSGSVPSSGSSGR_
RAD23A	Phosphorylation	S128		0.031	_EDKSPSEES(ph)APTTSPESVSGSVPSSGSSGR_
RAD23A	Phosphorylation	S133	0.164	0.423	_EDKSPSEESAPTTS(ph)PESVSGSVPSSGSSGR_
RAD23A	Phosphorylation	S219	-1.735		_AVEYLLTGIPGSPEPEHGSVQESQVS(ph)EQPATEAAGENPLEFLR_
SRPK1	Phosphorylation	S67	-1.128	-1.153	_GSAPHSESDLPEQEEEILGS(ph)DDDEQEDPNDYCK_
SRPK1	Ubiquitylation	K579	0.354		_K(gl)LIVAGK_
SRPK1	Ubiquitylation	K585	0.939		_KLIVAGK(gl)YSK_
SRPK2	Phosphorylation	S483	-1.638		_IPESQFPEFSTSLFSGSLEPVACGSVLSEGSPLTEQEES(ph)SPSHDR_
SRPK2	Phosphorylation	S496	0.096		_TVSAS(ph)STGDLPK_
SRPK2	Phosphorylation	S497	-0.015	-0.154	_TVSASS(ph)TGDLPK_
SRPK2	Ubiquitylation	K618	0.453		_HFALSGK(gl)YSR_
TARBP2	Phosphorylation	S142	-1.379	-1.564	_S(ph)PPMELQPPVS(ph)PQQSECNPVGALQELVVQK_
TARBP2	Phosphorylation	S152	-0.860	-0.978	_SPPMELQPPVS(ph)PQQSECNPVGALQELVVQK_
TARBP2	Phosphorylation	S156		-0.795	_SPPM(ox)ELQPPVS(ph)PQQSECNPVGALQELVVQK_
TOP2A	Phosphorylation	S4	-0.623	-0.424	_(ac)M(ox)EVS(ph)PLQPVNENM(ox)QVNK_
TOP2A	Ubiquitylation	K17	-0.250		_(ac)MEVSPLQPVNENMQVNK(gl)IKK_
TOP2A	Ubiquitylation	K96		0.284	_IFDEILVNAADNK(gl)QR_
TOP2A	Ubiquitylation	K131	0.553	-0.638	_GIPVVEHK(gl)VEK_
TOP2A	Ubiquitylation	K386	-2.203		_ENMTLQPK(gl)SFGSTCQLSEK_
TOP2A	Ubiquitylation	K397	0.214	0.360	_SFGSTCQLSEK(gl)FIK_
TOP2A	Ubiquitylation	K426		-0.502	_AQVQLNKK(gl)_
TOP2A	Ubiquitylation	K489	-0.029	0.171	_GK(gl)ILNVR_
TOP2A	Ubiquitylation	K520		-0.260	_IVGLQYKK(gl)_
TOP2A	Ubiquitylation	K529	0.862	0.065	_NYEDEDSLK(gl)TLR_
TOP2A	Ubiquitylation	K614		-0.287	_YYK(gl)GLGTSTSK_
TOP2A	Ubiquitylation	K622		-0.581	_GLGTSTSK(gl)EAK_
TOP2A	Ubiquitylation	K632	-0.171	-0.248	_EYFADMK(gl)R_
TOP2A	Ubiquitylation	K655	-0.091	-0.407	_YSGPEDDAAISLAFSK(gl)K_
TOP2A	Ubiquitylation	K656	-0.091	-0.441	_YSGPEDDAAISLAFSKK(gl)_
TOP2A	Ubiquitylation	K723		-1.207	_SIPSMVDGLK(gl)PGQR_
TOP2A	Ubiquitylation	K1088		0.061	_GYDSDPVK(gl)AWK_
TOP2A	Phosphorylation	S1142	0.072	0.040	_VPDEEENEES(ph)DNEKETEK_
TOP2A	Ubiquitylation	K1159	-0.411	-0.659	_EQELDTLK(gl)R_
TOP2A	Ubiquitylation	K1199	-0.674	-1.759	_EKQDEQVGLPGKGGK(gl)_
TOP2A	Phosphorylation	S1249	-0.907	-0.546	_TQMAEVLPS(ph)PR_
TOP2A	Phosphorylation	S1283	0.168	0.028	_NENTEGS(ph)PQEDGVELEGLK_
TOP2A	Phosphorylation	S1411	0.232	-0.105	_S(ph)VVSDLEADDVK_
TOP2A	Phosphorylation	S1414	0.884	0.877	_SVVS(ph)DLEADDVK_
TOP2A	Phosphorylation	S1429	-1.415	-2.977	_GSVPLSS(ph)SPPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	S1430		-1.317	_GSVPLSSS(ph)PPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	T1434	-1.348		_GSVPLSSSPPAT(ph)HFPDETEITNPVPK_
TOP2A	Phosphorylation	S1506		-0.384	_RKPS(ph)TSDDSDSNFEK_
VAPB	Ubiquitylation	K3	0.174		_(ac)AK(gl)VEQVLSLEPQHELK_
VAPB	Ubiquitylation	K118	-0.217		_EAKPEDLMDSK(gl)LR_
VAPB	Ubiquitylation	K147	0.150	0.167	_IISTTASK(gl)TETPIVSK_
VAPB	Phosphorylation	S158	2.164	2.536	_SLS(ph)SSLDDTEVKK_
VAPB	Phosphorylation	S160	0.543	0.936	_SLSSS(ph)LDDTEVKK_
VAPB	Ubiquitylation	K167		0.270	_SLSSSLDDTEVK(gl)K_
VAPB	Ubiquitylation	K168		0.270	_SLSSSLDDTEVK(gl)K_
VAPB	Ubiquitylation	K180		1.211	_LMEECK(gl)R_
VAPB	Ubiquitylation	K188	0.176	0.874	_LQGEMMK(gl)LSEENR_
VAPB	Phosphorylation	S214	0.747	1.178	_VAHSDKPGS(ph)TSTASFR_