RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPRD1B	1	-0.280	0.460	0.234	1.123	2.253	-0.005	0.487
RPRD1B	1	-0.280	0.460	0.178	1.395	2.538	-0.102	0.850
RECQL5	1	-0.670	1.270	3.649	0.084	1.224
ERCC5	1	-2.410	5.420
RPRD1A	1	-1.170	2.460	0.234	1.123	2.253	-0.005	0.487
MYO6	1	-1.580	2.560	0.037			0.700	0.607
MYO6	1	-1.580	2.560		-0.533
IKBKAP	0	-0.760	1.050	0.446	0.516	-0.004	0.427	0.134
ELP4	0	1.540	-0.580
CCNC	0	0.760	-0.860
RPAP2	0	-0.440	-0.220	-0.533
ELP3	0	-0.130	0.500
ELP3	0	-0.130	0.500	0.575
CCNH	0	1.480	-0.550
ELP2	0	0.130	-0.470	0.142
POLR2M	0	-0.020	0.080
POLR2M	0	-0.020	0.080	-0.361
POLR2M	0	-0.020	0.080

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CCNC	Ubiquitylation	K117		0.126	_LIAAATSVLK(gl)TR_
CCNH	Ubiquitylation	K189	0.418		_K(gl)TADDFLNR_
ELP2	Ubiquitylation	K484		-0.739	_LFAPWK(gl)R_
ELP2	Ubiquitylation	K524	0.072	-0.086	_FQFVSGADEK(gl)VLR_
ELP3	Ubiquitylation	K5	0.857	-0.808	_LK(gl)AKPIR_
ELP3	Ubiquitylation	K34	0.744		_QLIEAHEQGK(gl)DIDLNK_
ELP3	Ubiquitylation	K40	0.708		_DIDLNK(gl)VK_
ELP3	Ubiquitylation	K42	0.650		_DIDLNKVK(gl)TK_
ELP3	Ubiquitylation	K77	0.857	-0.808	_LK(gl)AKPIR_
ELP3	Ubiquitylation	K333		0.344	_GTGLYELWK(gl)SGR_
ELP3	Ubiquitylation	K392		0.034	_MK(gl)DLGIQCR_
ELP4	Ubiquitylation	K406	0.254	-0.819	_MDLAESAK(gl)R_
ERCC5	Phosphorylation	S766	-0.289	-0.748	_LKTEKEPDATPPS(ph)PR_
ERCC5	Phosphorylation	S809	-0.115	0.693	_NAPAAVDEGSIS(ph)PR_
ERCC5	Ubiquitylation	K858	0.818	1.193	_INSSTENSDEGLK(gl)VR_
ERCC5	Phosphorylation	S951	-0.018	-0.048	_ELTPAS(ph)PTCTNSVSK_
ERCC5	Phosphorylation	S988	0.598	1.186	_FDSSLLSS(ph)DDETK_
IKBKAP	Ubiquitylation	K716		-1.287	_IVTVVPQDTK(gl)LVLQMPR_
MYO6	Phosphorylation	S266		0.008	_LHLS(ph)SPDNFR_
MYO6	Phosphorylation	S267	-0.106	0.501	_LHLSS(ph)PDNFR_
MYO6	Ubiquitylation	K285	0.079		_YFANK(gl)ETDKQILQNR_
MYO6	Ubiquitylation	K408	0.078		_GTVIK(gl)VPLKVEQANNAR_
MYO6	Ubiquitylation	K634	0.366		_ELFESSTNNNKDTKQK(gl)_
MYO6	Ubiquitylation	K993	-0.079	1.133	_QK(gl)EEESQQQAVLEQERR_
MYO6	Ubiquitylation	K1053		-1.790	_NDGTRPK(gl)MTPEQMAK_
MYO6	Ubiquitylation	K1077	-0.135	0.805	_GPAVLATK(gl)AAAGTK_
MYO6	Ubiquitylation	K1089	0.440	1.326	_YDLSK(gl)WK_
MYO6	Ubiquitylation	K1120	0.732	0.435	_LK(gl)VYHAWK_
MYO6	Ubiquitylation	K1126	0.296		_VYHAWK(gl)SK_
MYO6	Ubiquitylation	K1142	-1.182	-0.570	_NTETEQRAPK(gl)SVTDYAQQNPAAQIPAR_
MYO6	Ubiquitylation	K1184	-1.200	-0.624	_IPFIRPADQYK(gl)DPQSK_
POLR2M	Phosphorylation	S10	-1.111	-1.528	_APES(ph)PPSADPALVAGPAEEAECPPPR_
POLR2M	Phosphorylation	S575		1.290	_VS(ph)SQAEDTSSSFDNLFIDR_
POLR2M	Phosphorylation	S667	0.502	0.499	_SGS(ph)PISSEERR_
RECQL5	Phosphorylation	S727	-0.587	-0.527	_GEVPGGSAHYGGPS(ph)PEKK_
RECQL5	Phosphorylation	S815	-0.400	-0.271	_YTGEEDGAGGHS(ph)PAPPQTEECLR_
RECQL5	Phosphorylation	T839	0.366	0.040	_DQGT(ph)PEVQPTPAK_
RPAP2	Ubiquitylation	K310	1.272		_LK(gl)ASENSESEYSR_
RPAP2	Ubiquitylation	K331		1.424	_SEITLVGISK(gl)K_
RPAP2	Ubiquitylation	K332		1.424	_SEITLVGISK(gl)K_
RPRD1A	Phosphorylation	S156	-0.063	-0.120	_VDENENCSSLGS(ph)PSEPPQTLDLVR_
RPRD1A	Phosphorylation	S158	-0.243	-0.235	_VDENENCSSLGSPS(ph)EPPQTLDLVR_
RPRD1B	Ubiquitylation	K11	0.621		_(ac)SSFSESALEK(gl)K_
RPRD1B	Ubiquitylation	K12		0.419	_(ac)SSFSESALEKK(gl)_
RPRD1B	Phosphorylation	S132	-0.334		_LSM(ox)EDS(ph)KSPPPK_
RPRD1B	Phosphorylation	S134	-0.203	0.030	_LSMEDSKS(ph)PPPK_
RPRD1B	Phosphorylation	S156	-0.063	-0.120	_VDENENCSSLGS(ph)PSEPPQTLDLVR_
RPRD1B	Phosphorylation	S158	-0.243	-0.235	_VDENENCSSLGSPS(ph)EPPQTLDLVR_
RPRD1B	Ubiquitylation	K272	-0.212	-0.554	_DVLSEK(gl)EK_
RPRD1B	Ubiquitylation	K274	-0.212	-0.554	_DVLSEK(gl)EK_