RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB24	1	0.100	-0.060
HTT	1	-0.200	-0.360	0.632			0.847	0.550
ATG9A	1	-0.430	0.730					1.551
GABARAPL2	0	1.830	-0.990
ATG16L1	0	0.400	-0.280
AMBRA1	0	1.670	-0.450	-1.226				-2.109
RAB23	0	1.290	-1.270				-0.106	0.952
WIPI2	0	0.250	-0.250
SQSTM1	0	-0.860	1.770	-2.165			-2.063	-1.741
SQSTM1	0	-0.440	0.530	-2.165			-2.063	-1.741
WDFY3	0	0.300	-0.760
FYCO1	0	0.970	-1.080				-1.408	0.596
GABARAP	0	-1.090	2.300
ULK1	0	0.740	-0.520
NBR1	0	0.470	-0.040	-2.408

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AMBRA1	Ubiquitylation	K175	-0.373	0.447	_REPFAVVK(gl)TASEMER_
ATG16L1	Phosphorylation	S304	-0.317	-1.220	_S(ph)VSSFPVPQDNVDTHPGSGK_
ATG9A	Phosphorylation	S18	0.284	0.175	_LEASYSDS(ph)PPGEEDLLVHVAEGSK_
ATG9A	Phosphorylation	S654	-0.181		_S(ph)FSPLQPGQAPTGR_
ATG9A	Phosphorylation	S656	-0.724	-0.246	_SFS(ph)PLQPGQAPTGR_
ATG9A	Phosphorylation	S828	-0.863	-0.673	_HPEPVPEEGS(ph)EDELPPQVHKV_
FYCO1	Ubiquitylation	K416	0.606	0.803	_TK(gl)VEEVNR_
GABARAP	Ubiquitylation	K13	-0.569		_FVYKEEHPFEK(gl)R_
GABARAPL2	Ubiquitylation	K20		-0.292	_CVESAK(gl)IR_
GABARAPL2	Ubiquitylation	K24	-0.237	-0.668	_AK(gl)YPDRVPVIVEK_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
NBR1	Ubiquitylation	K464	-0.807	-2.087	_LSHK(gl)GQQFGPR_
NBR1	Ubiquitylation	K515	-0.852		_TDDLTCQQEETFLLAK(gl)EER_
NBR1	Ubiquitylation	K539	-0.515	-0.635	_QLGEVTEQTEGTAACIPQKAK(gl)_
NBR1	Ubiquitylation	K627	-0.779	-1.425	_ALPDSMVSVK(gl)R_
NBR1	Ubiquitylation	K767	-1.436		_GAEGK(gl)PGVEAGQEPAEAGER_
RAB24	Ubiquitylation	K104	0.985	1.040	_FWVK(gl)ELR_
RAB24	Ubiquitylation	K156	1.852	-0.833	_AQLFETSSK(gl)TGQSVDELFQK_
SQSTM1	Ubiquitylation	K13	0.150	0.302	_AYLLGK(gl)EDAAR_
SQSTM1	Phosphorylation	S28		-0.721	_RFSFCCS(ph)PEPEAEAEAAAGPGPCER_
SQSTM1	Ubiquitylation	K141	-0.915		_YK(gl)CSVCPDYDLCSVCEGK_
SQSTM1	Ubiquitylation	K157	-0.852	-0.677	_CSVCPDYDLCSVCEGK(gl)GLHR_
SQSTM1	Phosphorylation	T269	-0.681	-0.421	_LT(ph)PVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S272	0.171	0.044	_LTPVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S332		-0.007	_IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK_
SQSTM1	Ubiquitylation	K420	-1.122	-0.061	_LLQTK(gl)NYDIGAALDTIQYSK_
SQSTM1	Ubiquitylation	K435	-1.352	-0.780	_NYDIGAALDTIQYSK(gl)HPPPL_
ULK1	Phosphorylation	S450	-0.237	-0.173	_NLQS(ph)PTQFQTPR_
ULK1	Phosphorylation	T468	-0.247	0.456	_SGST(ph)SPLGFAR_
ULK1	Phosphorylation	S469	0.035	0.470	_SGSTS(ph)PLGFAR_
ULK1	Phosphorylation	S623	-0.793	-0.874	_NPLPPILGS(ph)PTK_
ULK1	Phosphorylation	T625	-0.547	-0.776	_NPLPPILGSPT(ph)K_
ULK1	Phosphorylation	T636		0.087	_T(ph)PSSQNLLALLAR_
ULK1	Phosphorylation	S638	-0.154	0.598	_TPS(ph)SQNLLALLAR_
WDFY3	Phosphorylation	S817		-0.379	_HAYHSVS(ph)TPPVYPPK_
WDFY3	Phosphorylation	T818		-0.744	_HAYHSVST(ph)PPVYPPK_
WDFY3	Ubiquitylation	K957		-1.297	_LASPLNCGAWDK(gl)K_
WDFY3	Ubiquitylation	K958		-1.297	_LASPLNCGAWDK(gl)K_
WDFY3	Ubiquitylation	K1010		-0.942	_SLVK(gl)SAEGSTVPLTR_
WIPI2	Ubiquitylation	K223		-1.289	_LATASEK(gl)GTVIR_
WIPI2	Ubiquitylation	K341		-0.847	_NICSLATIQK(gl)IPR_
WIPI2	Phosphorylation	S413	0.225	0.402	_GTYVPSS(ph)PTR_
WIPI2	Phosphorylation	T415	0.157		_GTYVPSSPT(ph)R_