bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RAD9A

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RAD9A 1 3.049 -2.070 3.350

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RAD9A Phosphorylation S277 -0.249 -0.052 _DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER_

Background Information for RAD9A:


Pubmed-RAD9A »
Uniprot-RAD9A »
Biogrid-RAD9A »
ProteomicsDB-RAD9A »

Tumorportal-RAD9A »
COSMIC-RAD9A »
GenomeRNAi-RAD9A »
Genecards-RAD9A


Protein-protein Interactions for RAD9A
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CETN2 Cat. description Hein, Mann, Cell 2015
Category members IP bait EVPL Cat. description Hein, Mann, Cell 2015
Category members IP bait PEO1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SPAST Cat. description Hein, Mann, Cell 2015
Category members IP bait HUS1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HUS1B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RAD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RAD9A
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Rad9/Ddc1 IPR007268 0.07
Category members Rad9 IPR026584 0


Protein complexes (CORUM database) featuring RAD9A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 2196 LIG1-9-1-1 complex Database 0.39
Category members Corum 2197 FEN1-9-1-1 complex Database 0.39
Category members Corum 267 Checkpoint 9-1-1 complex Database 0.21
Category members Corum 271 Checkpoint 9-1-1 complex Database 0.21
Category members Corum 275 Checkpoint 9-1-1 complex Database 0.21
Category members Corum 276 Checkpoint 9-1-1 complex Database 0.21
Category members Corum 2809 9-1-1 complex Database 0.21
Category members Corum 2198 RAD9-RAD1-HUS1-POLB complex Database 0.01
Category members Corum 2808 RAD9-RAD1-HUS1-APE1 complex Database 0.01
Category members Corum 268 Checkpoint Rad complex Database 0
Category members Corum 274 RAD17-RFC-9-1-1 checkpoint supercomplex Database 0


Categories featuring RAD9A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0006281 DNA repair Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members Pathway Pathway_320 REACTOME_CELL_CYCLE 0 11.08
Category members Pathway Pathway_978 PID_ATM_PATHWAY 0 4.31
Category members Pathway Pathway_790 REACTOME_CELL_CYCLE_CHECKPOINTS 0 3.89
Category members GO Category GO:0006974 cellular response to DNA damage stimulus Database 3.57
Category members Pathway Pathway_865 PID_ATR_PATHWAY 0 3.46
Category members GO Category GO:0006260 DNA replication Database 3.34
Category members Pathway Pathway_881 PID_TELOMERASE_PATHWAY 0 2.64
Category members GO Category GO:0000077 DNA damage checkpoint Database 2.04
Category members GO Category GO:0019899 enzyme binding Database 1.57
Category members Pathway Pathway_864 REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS 0 1.21
Category members GO Category GO:0031573 intra-S DNA damage checkpoint Database 1.18
Category members Pathway Pathway_873 PID_FANCONI_PATHWAY 0 1.09
Category members Pathway Pathway_863 REACTOME_G2_M_CHECKPOINTS 0 0.74
Category members Pathway Pathway_979 BIOCARTA_ATRBRCA_PATHWAY 0 0.6
Category members GO Category GO:0019901 protein kinase binding Database 0.37
Category members GO Category GO:0043065 positive regulation of apoptotic process Database 0.26
Category members GO Category GO:0042826 histone deacetylase binding Database 0.16
Category members GO Category GO:0000075 cell cycle checkpoint Database 0
Category members GO Category GO:0000076 DNA replication checkpoint Database 0
Category members GO Category GO:0008408 3'-5' exonuclease activity Database 0
Category members GO Category GO:0008853 exodeoxyribonuclease III activity Database 0
Category members GO Category GO:0017124 SH3 domain binding Database 0
Category members GO Category GO:0030896 checkpoint clamp complex Database 0


.

© Copyright Svejstrup Laboratory 2015