RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CLTA	2	-0.050	0.210
CLTA	2	-0.050	0.210		-1.163	-0.046
GGA3	1	1.320	-0.820
GGA3	1	1.320	-0.820
PLD2	1	-0.390	-0.250
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
KDELR1	0	1.060	-0.420				0.819	0.705
GBF1	0	0.620	-0.640				-0.785	-0.409
GOSR2	0	-0.380	0.660
GOSR2	0	-0.380	0.660				1.115	0.357
COPA	0			0.225	0.454	0.171	0.017	-0.104
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
USO1	0	0.670	-0.440
USO1	0	0.670	-0.440	0.256			0.826	0.600
PIP5K1A	0	0.290	-0.670			0.831
PIP5K1A	0	1.090	-0.930			0.831
PIP5K1A	0	0.290	-0.670		0.249	-0.303		-1.270
PIP5K1A	0	1.090	-0.930		0.249	-0.303		-1.270
ARF1	0	0.020	0.040		0.702	-1.163
AP2M1	0	-1.250	2.200	-0.363	0.794	-0.187	0.544	0.370
AP2M1	0	-1.250	2.200
CLTB	0
AP2A1	0	0.510	-1.060	0.414	0.086	0.168	-0.002	0.179

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP2A1	Phosphorylation	S655		-1.574	_DPSSNDINGGM(ox)EPTPSTVSTPS(ph)PSADLLGLR_
AP2A1	Ubiquitylation	K880	-0.136		_WK(gl)QLSLPQQEAQK_
AP2M1	Ubiquitylation	K249	0.386	0.460	_IVIEK(gl)QGK_
AP2M1	Ubiquitylation	K263	-0.058	-0.236	_SGK(gl)QSIAIDDCTFHQCVR_
AP2M1	Ubiquitylation	K281	-0.401	0.214	_LSK(gl)FDSER_
AP2M1	Ubiquitylation	K306	-2.014	-0.836	_TTK(gl)DIILPFR_
AP2M1	Ubiquitylation	K337	-1.115		_SNFK(gl)PSLLAQK_
AP2M1	Ubiquitylation	K364	-1.253		_IPTPLNTSGVQVICMK(gl)GK_
ARFGAP1	Phosphorylation	S37	0.390	0.076	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K74	0.390	0.746	_DIELEK(gl)MK_
ARFGAP1	Phosphorylation	S144	-0.169	-0.150	_TLPS(ph)M(ox)VHRVSGQPQSVTASSDK_
ARFGAP1	Phosphorylation	S150	0.394	0.096	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K226	-0.373		_FASAAK(gl)EGATK_
ARFGAP1	Ubiquitylation	K231		-0.415	_EGATK(gl)FGSQASQK_
ARFGAP1	Phosphorylation	S343	0.527	0.767	_S(ph)PSSDSWTCADTSTER_
CLTA	Phosphorylation	S105	1.262	1.599	_LQS(ph)EPESIRK_
CLTA	Ubiquitylation	K223	-0.282	0.457	_LCDFNPK(gl)SSK_
CLTA	Ubiquitylation	K226	-0.199	1.848	_LCDFNPKSSK(gl)_
CLTA	Ubiquitylation	K242	0.149		_SVLISLK(gl)QAPLVH_
CLTB	Ubiquitylation	K204	-0.062	1.007	_VAQLCDFNPK(gl)SSK_
COPA	Ubiquitylation	K4	0.360		_MLTK(gl)FETK_
COPA	Ubiquitylation	K46	-0.135		_MCTLIDK(gl)FDEHDGPVR_
COPA	Ubiquitylation	K169	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Ubiquitylation	K170	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Phosphorylation	S173	0.372	0.591	_NLS(ph)PGAVESDVR_
COPA	Ubiquitylation	K238	-0.248	0.174	_M(ox)NESK(gl)AWEVDTCR_
COPA	Ubiquitylation	K280		0.440	_VWDMSK(gl)R_
COPA	Ubiquitylation	K350	-0.803	-0.295	_QLDFNSSK(gl)DVAVMQLR_
COPA	Ubiquitylation	K411		-2.140	_DADSQNPDAPEGK(gl)R_
COPA	Ubiquitylation	K441	-1.204	-0.477	_NLK(gl)NEITK_
COPA	Ubiquitylation	K446	-1.464		_NLKNEITK(gl)K_
COPA	Ubiquitylation	K574	-0.649	0.517	_VK(gl)GNNVYCLDR_
COPA	Ubiquitylation	K598		0.427	_VLTIDPTEFK(gl)FK_
COPA	Ubiquitylation	K600	0.188		_VLTIDPTEFKFK(gl)_
COPA	Ubiquitylation	K721	-0.198		_MMK(gl)IAEIR_
COPA	Ubiquitylation	K825	-0.187		_GFFEGTIASK(gl)GK_
COPA	Ubiquitylation	K827	-0.512	0.105	_GFFEGTIASKGK(gl)_
COPA	Ubiquitylation	K988		-0.943	_NWK(gl)DAGLK_
COPA	Ubiquitylation	K993	0.298	-1.064	_DAGLK(gl)NGVPAVGLK_
COPA	Ubiquitylation	K1082		-0.397	_ETLEQQK(gl)R_
COPA	Ubiquitylation	K1184	-0.952	-1.020	_GKPVEK(gl)CPLSGACYSPEFK_
GBF1	Ubiquitylation	K212	0.865	1.415	_NYVGTNMK(gl)K_
GBF1	Ubiquitylation	K606	0.112		_VLNSLTQQEKK(gl)_
GBF1	Ubiquitylation	K715	-0.719	1.164	_LLITGTEQFNQKPK(gl)_
GBF1	Phosphorylation	S1298	-0.288	-0.023	_ADAPDAGAQS(ph)DSELPSYHQNDVSLDR_
GBF1	Phosphorylation	S1300	-0.275	-0.056	_ADAPDAGAQSDS(ph)ELPSYHQNDVSLDR_
GBF1	Phosphorylation	T1317		0.742	_GYT(ph)SDSEVYTDHGRPGK_
GBF1	Phosphorylation	S1318	0.417	0.541	_GYTS(ph)DSEVYTDHGRPGK_
GBF1	Ubiquitylation	K1529		-0.652	_HLETGGQK(gl)IEADSR_
GBF1	Phosphorylation	S1773		-1.189	_TPGHPPPPEIPSELGACDFEKPES(ph)PR_
GGA3	Ubiquitylation	K100	-0.181	-0.013	_VVSPK(gl)YLGDR_
GGA3	Phosphorylation	S159	-1.676	-1.492	_TLIPS(ph)PPPRPK_
GGA3	Ubiquitylation	K176	-0.101		_NPVFDDEEKSK(gl)LLAK_
GGA3	Ubiquitylation	K180	-0.258	0.226	_LLAK(gl)LLK_
GGA3	Ubiquitylation	K185	-0.073	-0.327	_SK(gl)NPDDLQEANK_
GGA3	Ubiquitylation	K195	0.623	-0.266	_SKNPDDLQEANK(gl)LIK_
GGA3	Ubiquitylation	K198	-0.091	0.421	_LIK(gl)SMVKEDEAR_
GGA3	Ubiquitylation	K202	0.681	2.639	_SMVK(gl)EDEAR_
GGA3	Phosphorylation	S425	-0.079		_EQS(ph)DLDFFSPR_
GOSR2	Ubiquitylation	K159	-0.182	0.653	_LTLK(gl)GTQK_
PIP5K1A	Ubiquitylation	K78		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K79		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K103	-0.225	-2.556	_GAIQLGITHTVGSLSTK(gl)PER_
PIP5K1A	Ubiquitylation	K223	-0.376		_EK(gl)PLPTFK_
PIP5K1A	Phosphorylation	S458		-1.008	_KIPLKPS(ph)PSK_
PIP5K1A	Phosphorylation	S460		-1.118	_KIPLKPSPS(ph)K_
PIP5K1A	Phosphorylation	S475	-0.061	0.135	_RAGS(ph)SGNSCITYQPSVSGEHK_
PIP5K1A	Phosphorylation	S476	0.621		_RAGSS(ph)GNSCITYQPSVSGEHK_
PLD2	Ubiquitylation	K80		2.298	_YTSGSK(gl)VGTCTLYSVR_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
USO1	Phosphorylation	S951	-0.603	-0.232	_DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI_