RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
VTI1B	1	0.710	-0.320
VAPA	1	-2.350	3.970			-2.551	0.014	0.056
ANXA7	1	-1.410	3.550	0.673			0.422	-0.159
VPS33B	1	0.750	-0.120
RABEP1	0	1.320	-1.050
VAMP3	0	-0.800	0.690				0.418
VAMP3	0	-0.800	0.690
DNM1L	0	0.850	0.090	0.362
SNAP23	0	0.830	-0.330				0.697	0.779
SNAP29	0	-0.920	0.370
NAPA	0			0.479			0.251	0.740
GOSR2	0	-0.380	0.660
GOSR2	0	-0.380	0.660				1.115	0.357
GCA	0	-0.780	1.110	0.315
VAMP8	0	0.400	-0.770
NAPG	0	-0.240	0.190
STX11	0	0.630	-0.870
USO1	0	0.670	-0.440
USO1	0	0.670	-0.440	0.256			0.826	0.600
NPLOC4	0	1.900	-1.110	0.105			-0.588	-0.098
CHP1	0	0.130	0.190				-0.105	0.192
ATG7	0	-0.140	0.720	0.708

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANXA7	Ubiquitylation	K199	0.347		_AMK(gl)GFGTDEQAIVDVVANR_
ANXA7	Ubiquitylation	K430	0.263	0.610	_LYYAMK(gl)GAGTDDSTLVR_
DNM1L	Ubiquitylation	K226	-0.801		_VPVGDQPK(gl)DIELQIR_
DNM1L	Ubiquitylation	K371		-0.203	_DCLPELK(gl)TR_
DNM1L	Phosphorylation	S610		0.467	_VPSALAPAS(ph)QEPSPAASAEADGK_
DNM1L	Phosphorylation	S614		-1.241	_VPSALAPASQEPS(ph)PAASAEADGK_
DNM1L	Phosphorylation	S671	-1.151	-1.028	_SKPIPIM(ox)PAS(ph)PQK_
GOSR2	Ubiquitylation	K159	-0.182	0.653	_LTLK(gl)GTQK_
NAPA	Ubiquitylation	K153	-0.341		_AIAHYEQSADYYK(gl)GEESNSSANK_
NAPG	Ubiquitylation	K55	0.270		_QFEQAK(gl)DACLR_
NAPG	Phosphorylation	S284	-0.418	-0.976	_KS(ph)PATPQAKPDGVTATAADEEEDEYSGGLC_
NAPG	Phosphorylation	T287	-0.418	-1.005	_KSPAT(ph)PQAKPDGVTATAADEEEDEYSGGLC_
NPLOC4	Ubiquitylation	K31	0.434		_ETAATFLK(gl)K_
NPLOC4	Ubiquitylation	K32		0.249	_ETAATFLKK(gl)_
NPLOC4	Ubiquitylation	K52	1.485		_NK(gl)TGEITASSNK_
NPLOC4	Ubiquitylation	K68	0.309	1.149	_SLNLLK(gl)IK_
NPLOC4	Ubiquitylation	K70		0.626	_SLNLLKIK(gl)_
NPLOC4	Ubiquitylation	K191		-0.694	_FVALENISCKIK(gl)_
NPLOC4	Ubiquitylation	K243		0.275	_K(gl)TGNQHFGYLYGR_
NPLOC4	Ubiquitylation	K260		-0.573	_YTEHK(gl)DIPLGIR_
NPLOC4	Ubiquitylation	K544		-0.244	_TRNEELAQTWK(gl)R_
RABEP1	Ubiquitylation	K107	-0.436	0.507	_QEAIDEVK(gl)R_
RABEP1	Phosphorylation	S374	-0.114	-0.032	_GS(ph)VHSLDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S377	-0.376	-0.063	_GSVHS(ph)LDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S407	1.036	0.844	_AQS(ph)TDSLGTSGSLQSK_
RABEP1	Phosphorylation	S410	1.127	0.971	_RAQSTDS(ph)LGTSGSLQSK_
SNAP23	Phosphorylation	S5	1.129	1.241	_(ac)M(ox)DNLS(ph)SEEIQQR_
SNAP23	Phosphorylation	S20	-0.626	0.740	_AHQITDES(ph)LESTRR_
SNAP23	Phosphorylation	S34		1.443	_ILGLAIES(ph)QDAGIK_
SNAP23	Ubiquitylation	K49	1.298	0.629	_TITMLDEQK(gl)EQLNR_
SNAP23	Ubiquitylation	K64	0.545		_IEEGLDQINK(gl)DMR_
SNAP23	Ubiquitylation	K71		0.995	_ETEK(gl)TLTELNK_
SNAP23	Ubiquitylation	K97	0.493	0.829	_NFESGK(gl)AYK_
SNAP23	Ubiquitylation	K100	0.095		_AYK(gl)TTWGDGGENSPCNVVSK_
SNAP23	Phosphorylation	S110	0.504	0.683	_TTWGDGGENS(ph)PCNVVSK_
SNAP23	Ubiquitylation	K185	-0.363		_DMALNIGNEIDAQNPQIK(gl)R_
SNAP29	Ubiquitylation	K107	0.335		_ISQK(gl)HINSIK_
SNAP29	Ubiquitylation	K126	-2.712		_SK(gl)PVETPPEQNGTLTSQPNNR_
SNAP29	Ubiquitylation	K147	-0.454	0.507	_LK(gl)EAISTSK_
SNAP29	Ubiquitylation	K154	0.325	0.758	_LKEAISTSK(gl)EQEAK_
SNAP29	Ubiquitylation	K159	-0.089		_EQEAK(gl)YQASHPNLR_
STX11	Ubiquitylation	K103	0.580	1.017	_GEVIHCK(gl)LR_
USO1	Phosphorylation	S951	-0.603	-0.232	_DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI_
VAMP3	Phosphorylation	T9	0.318	-0.040	_(ac)STGPTAAT(ph)GSNR_
VAMP3	Phosphorylation	S11	0.474	0.952	_(ac)STGPTAATGS(ph)NR_
VAMP3	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP3	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP3	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP3	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VAMP8	Ubiquitylation	K47	0.262	0.420	_NK(gl)TEDLEATSEHFK_
VAMP8	Phosphorylation	S55	0.753	0.547	_NKTEDLEATS(ph)EHFK_
VAMP8	Ubiquitylation	K59	-0.052		_NKTEDLEATSEHFK(gl)TTSQK_
VAPA	Ubiquitylation	K180		1.211	_LMEECK(gl)R_
VAPA	Ubiquitylation	K188	0.176	0.874	_LQGEMMK(gl)LSEENR_
VAPA	Phosphorylation	S214	0.747	1.178	_VAHSDKPGS(ph)TSTASFR_
VPS33B	Ubiquitylation	K321		1.641	_GMDIK(gl)QMK_
VPS33B	Ubiquitylation	K480	-0.791		_ITDAFSSLAK(gl)R_
VPS33B	Ubiquitylation	K504	-0.823	-0.779	_VDGEYDLK(gl)VPR_
VTI1B	Ubiquitylation	K13	0.008	1.711	_(ac)ASSAASSEHFEK(gl)LHEIFR_