RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
THRAP3	3	1.430	-0.880	0.813	-0.969	0.662	0.407	0.317
YBX2	2	0.320	-0.460		-0.197	-0.190	-1.344	-0.617
YBX3	2	-0.210	0.250		0.674	0.402	-1.244	-0.405
ELAVL1	1	-0.160	0.190	-0.309	-1.620	-0.465	-0.437	0.244
PAIP1	1	0.620	-0.520				2.380	-0.190
PAIP1	1	0.830	-0.570				2.380	-0.190
PABPC1	0	0.100	-0.400	0.167	-0.387	-0.147	-0.312	-0.037
CIRBP	0	-0.810	0.840		0.581	-0.442

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ELAVL1	Ubiquitylation	K116	1.733		_LQSK(gl)TIK_
ELAVL1	Ubiquitylation	K119	1.073		_TIK(gl)VSYAR_
ELAVL1	Ubiquitylation	K131	-0.134		_PSSEVIK(gl)DANLYISGLPR_
ELAVL1	Ubiquitylation	K147	0.592	1.144	_TMTQK(gl)DVEDMFSR_
ELAVL1	Phosphorylation	S224	-1.255		_NVALLS(ph)QLYHSPARR_
ELAVL1	Phosphorylation	S229	-1.194	-0.793	_NVALLSQLYHS(ph)PAR_
ELAVL1	Ubiquitylation	K347	1.756	0.731	_ILQVSFK(gl)TNK_
PABPC1	Ubiquitylation	K78	-0.883	0.807	_ALDTMNFDVIK(gl)GKPVR_
PABPC1	Ubiquitylation	K95	-0.105	0.553	_K(gl)SGVGNIFIK_
PABPC1	Ubiquitylation	K104	-0.977	-0.336	_SGVGNIFIK(gl)NLDK_
PABPC1	Ubiquitylation	K108	-0.071	0.530	_NLDK(gl)SIDNK_
PABPC1	Ubiquitylation	K138	-0.960		_VVCDENGSK(gl)GYGFVHFETQEAAER_
PABPC1	Ubiquitylation	K157	-0.582		_AIEK(gl)MNGMLLNDRK_
PABPC1	Ubiquitylation	K188	-0.826	-0.017	_AK(gl)EFTNVYIK_
PABPC1	Ubiquitylation	K213	-0.170		_DLFGK(gl)FGPALSVK_
PABPC1	Ubiquitylation	K231	0.080		_SK(gl)GFGFVSFER_
PABPC1	Ubiquitylation	K259	-0.125		_ELNGK(gl)QIYVGR_
PABPC1	Ubiquitylation	K279	-0.143	0.326	_K(gl)FEQMK(gl)QDR_
PABPC1	Ubiquitylation	K284	-0.108	0.322	_K(gl)FEQMK(gl)QDR_
PABPC1	Ubiquitylation	K312	0.122		_K(gl)EFSPFGTITSAK_
PABPC1	Ubiquitylation	K361	-0.142		_IVATK(gl)PLYVALAQR_
PABPC1	Ubiquitylation	K512	-0.640	0.085	_TVPQYK(gl)YAAGVR_
PAIP1	Ubiquitylation	K363	0.995		_DVK(gl)QMLLK_
THRAP3	Phosphorylation	S184	0.079	0.248	_SSS(ph)KDSRPSQAAGDNQGDEAK_
THRAP3	Phosphorylation	T210	3.824		_EQTFSGGT(ph)SQDTK_
THRAP3	Phosphorylation	S211	3.487	3.148	_EQTFSGGTS(ph)QDTK_
THRAP3	Phosphorylation	S232	-0.501	-0.585	_ASESSKPWPDATYGTGS(ph)ASR_
THRAP3	Phosphorylation	S243	0.422	0.427	_ASAVSELS(ph)PR_
THRAP3	Phosphorylation	S248	0.461	0.278	_ERS(ph)PALKSPLQSVVVR_
THRAP3	Phosphorylation	S253	0.721	1.235	_SPALKS(ph)PLQSVVVR_
THRAP3	Phosphorylation	S315		0.541	_KS(ph)PVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S320	-0.234	-0.545	_KSPVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S377	2.629	2.451	_IKEKGS(ph)FSDTGLGDGK_
THRAP3	Phosphorylation	S379	0.975	1.024	_GSFS(ph)DTGLGDGK_
THRAP3	Phosphorylation	S575	1.245	0.792	_MDS(ph)FDEDLARPSGLLAQER_
THRAP3	Phosphorylation	S672	0.274	0.190	_NKKS(ph)PEIHR_
THRAP3	Phosphorylation	S682	0.380	0.508	_IDIS(ph)PSTFR_
THRAP3	Phosphorylation	S684	0.619	0.637	_RIDISPS(ph)TFRK_
THRAP3	Phosphorylation	T874	-1.185	-1.519	_NREEEWDPEYT(ph)PK_
THRAP3	Phosphorylation	S928	0.752	0.713	_WAHDKFS(ph)GEEGEIEDDESGTENR_
THRAP3	Phosphorylation	S939	0.345	0.471	_FSGEEGEIEDDES(ph)GTENR_
THRAP3	Phosphorylation	T953	-0.085		_FSGEEGEIEDDESGTENREEKDNIQPT(ph)TE_
YBX2	Ubiquitylation	K64	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX2	Ubiquitylation	K137	-0.751	0.084	_GAEAANVTGPGGVPVQGSK(gl)YAADR_
YBX2	Phosphorylation	Y162		-0.210	_NYQQNY(ph)QNSESGEKNEGSESAPEGQAQQR_
YBX2	Phosphorylation	S165	0.119	0.151	_NYQQNYQNS(ph)ESGEK_
YBX2	Ubiquitylation	K170	-0.297	0.298	_NYQQNYQNSESGEK(gl)NEGSESAPEGQAQQR_
YBX2	Phosphorylation	S174	0.041	0.228	_NEGS(ph)ESAPEGQAQQR_
YBX2	Phosphorylation	S176	0.061	0.075	_NEGSES(ph)APEGQAQQR_
YBX2	Phosphorylation	S209	0.658	-0.148	_RPQYS(ph)NPPVQGEVM(ox)EGADNQGAGEQGRPVR_
YBX3	Phosphorylation	S34	-1.234	-1.488	_S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX3	Phosphorylation	S79		-2.262	_SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_
YBX3	Ubiquitylation	K90	3.724	2.851	_VLATK(gl)VLGTVK_
YBX3	Ubiquitylation	K96	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX3	Ubiquitylation	K113	1.472	1.136	_NDTK(gl)EDVFVHQTAIK_
YBX3	Ubiquitylation	K124	-0.184	0.337	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Ubiquitylation	K125	-0.123	0.220	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Phosphorylation	S203	-0.609	-0.604	_NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX3	Ubiquitylation	K268	-0.103	-0.702	_IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX3	Phosphorylation	S324	-1.327	-0.720	_PAPAVGEAEDKENQQATSGPNQPS(ph)VR_