bioLOGIC-db

bioLOGIC Data

Query: CIRBP

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
CIRBP	0	0.840	-0.810	0.840		0.581	-0.442

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence

ProteomicsDB-CIRBP »

Protein-protein Interactions for CIRBP

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait BAG2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CBX4	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait HNRNPA1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait JUNB	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NOP56	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NRIP3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ORC1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PAPOLA	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PLK1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RAD54L	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RPL35	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TRAPPC8	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CIRBP	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in CIRBP

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	RRM_dom	IPR000504	4.34
Category members	RRM_dom_euk	IPR003954	0.18

Protein complexes (CORUM database) featuring CIRBP

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	351	Spliceosome	Database	9.3

Categories featuring CIRBP

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	GO Category	GO:0000166	nucleotide binding	Database	5.91
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0010494	cytoplasmic stress granule	Database	1.32
Category members	GO Category	GO:0003676	nucleic acid binding	Database	0.83
Category members	GO Category	GO:0009411	response to UV	Database	0.79
Category members	GO Category	GO:0017148	negative regulation of translation	Database	0.34
Category members	GO Category	GO:0003730	mRNA 3'-UTR binding	Database	0.24
Category members	GO Category	GO:0030371	translation repressor activity	Database	0.2
Category members	GO Category	GO:0034063	stress granule assembly	Database	0.13
Category members	GO Category	GO:0009409	response to cold	Database	0
Category members	GO Category	GO:0045727	positive regulation of translation	Database	0
Category members	GO Category	GO:0048255	mRNA stabilization	Database	0