RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
VCP	2	1.650	-0.640	-0.182	0.578	-0.596	0.007	-0.036
TGFB1	0	-0.550	1.050
SUMO1	0	0.450	0.060	-0.088	0.599	0.276	0.608	0.499
AJUBA	0	-0.310	0.400
MPP7	0	0.640	-0.320				1.118	0.576
SPIDR	0	-0.940	1.010
TPPP	0	0.500	-0.470
FAF1	0	0.870	-0.650	0.213

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AJUBA	Phosphorylation	S119	0.930		_LEPTAPALS(ph)PR_
FAF1	Ubiquitylation	K139	-0.732		_QILENELQIPVSK(gl)MLLK_
FAF1	Ubiquitylation	K143	-0.325	0.510	_MLLK(gl)GWK_
FAF1	Ubiquitylation	K146	0.008	0.988	_GWK(gl)TGDVEDSTVLK_
FAF1	Ubiquitylation	K157	-0.570	-0.411	_TGDVEDSTVLK(gl)SLHLPK_
FAF1	Ubiquitylation	K221	0.454	0.951	_EYNLNFSGSSTIQEVK(gl)R_
FAF1	Phosphorylation	T580	-0.344		_IRT(ph)PSGEFLER_
FAF1	Phosphorylation	S582	0.205	0.092	_TPS(ph)GEFLER_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
SPIDR	Ubiquitylation	K346		-0.669	_VLFTK(gl)ETAGYLR_
SUMO1	Phosphorylation	S2	0.441	0.416	_(ac)S(ph)DQEAKPSTEDLGDKK_
SUMO1	Ubiquitylation	K7	-0.850	-1.885	_(ac)SDQEAK(gl)PSTEDLGDKK_
SUMO1	Ubiquitylation	K16	-0.686	-1.532	_(ac)SDQEAKPSTEDLGDK(gl)KEGEYIK_
SUMO1	Ubiquitylation	K17	-0.857	-1.847	_(ac)SDQEAKPSTEDLGDKK(gl)EGEYIK_
SUMO1	Ubiquitylation	K23	0.713	-0.346	_EGEYIK(gl)LK_
SUMO1	Ubiquitylation	K37	0.417		_VIGQDSSEIHFK(gl)VK_
SUMO1	Ubiquitylation	K45	0.975		_MTTHLK(gl)K_
SUMO1	Ubiquitylation	K46	0.647		_K(gl)LKESYCQR_
SUMO1	Ubiquitylation	K48	-0.241	-0.185	_LK(gl)ESYCQR_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TPPP	Phosphorylation	S32	0.640	0.805	_RLS(ph)LESEGAGEGAAASPELSALEEAFR_
TPPP	Phosphorylation	S35	0.640	0.977	_RLSLES(ph)EGAGEGAAASPELSALEEAFR_
TPPP	Phosphorylation	S160	-0.406	-0.623	_AISS(ph)PTVSR_
VCP	Phosphorylation	S3	0.795	1.142	_(ac)AS(ph)GADSKGDDLSTAILK_
VCP	Phosphorylation	S7	0.312	0.941	_(ac)ASGADS(ph)KGDDLSTAILK_
VCP	Ubiquitylation	K8	-0.439	-0.154	_(ac)ASGADSK(gl)GDDLSTAILK_
VCP	Ubiquitylation	K18	-0.452	0.181	_GDDLSTAILK(gl)QK_
VCP	Ubiquitylation	K20	-0.512	0.529	_(ac)ASGADSKGDDLSTAILKQK(gl)_
VCP	Ubiquitylation	K60	0.678	0.493	_GDTVLLK(gl)GKK_
VCP	Ubiquitylation	K81	0.084		_EAVCIVLSDDTCSDEK(gl)IR_
VCP	Ubiquitylation	K109	-0.847	-0.260	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K112	-0.736	-0.276	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K148	-0.262	-0.087	_K(gl)GDIFLVR_
VCP	Ubiquitylation	K211	1.383	0.902	_K(gl)QLAQIK_
VCP	Ubiquitylation	K236	-0.526	-0.178	_AIGVK(gl)PPR_
VCP	Ubiquitylation	K251	-0.110		_GILLYGPPGTGK(gl)TLIAR_
VCP	Ubiquitylation	K336	0.522		_IVSQLLTLMDGLK(gl)QR_
VCP	Ubiquitylation	K386	1.339	0.706	_LEILQIHTK(gl)NM(ox)K_
VCP	Ubiquitylation	K389	0.568	1.195	_LEILQIHTKNMK(gl)_
VCP	Ubiquitylation	K505	0.377	0.794	_FLK(gl)FGMTPSK_
VCP	Ubiquitylation	K524		-0.528	_GVLFYGPPGCGK(gl)TLLAK_
VCP	Ubiquitylation	K529		-0.250	_GVLFYGPPGCGKTLLAK(gl)_
VCP	Ubiquitylation	K565	0.645	0.689	_EIFDK(gl)AR_
VCP	Ubiquitylation	K615	1.209	1.270	_VINQILTEMDGMSTKK(gl)_
VCP	Ubiquitylation	K651	-1.709	-0.719	_LDQLIYIPLPDEK(gl)SR_
VCP	Ubiquitylation	K658	0.362	0.711	_VAILK(gl)ANLR_
VCP	Ubiquitylation	K663	-0.839		_K(gl)SPVAKDVDLEFLAK_
VCP	Ubiquitylation	K668	-0.536	0.265	_SPVAK(gl)DVDLEFLAK_
VCP	Ubiquitylation	K696	1.574	1.691	_ACK(gl)LAIR_
VCP	Ubiquitylation	K754	0.510	0.939	_K(gl)YEMFAQTLQQSR_