bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Category

Results for the Category
rRNA binding
(GO:0019843)

RNAi screen result RNAPII IP (MG132) CSB IP CSB IP (MG132) Chrom. Chrom. (MG132) Ubi /Phospo Ubi /Phospho (MG132)
W

Protein Results:

 Results for post-translational modifications (below)
Gene name MGoogle Score RNAi high RNAi low RNAPII-IP (MG132) CSB-IP CSB-IP (MG132) Chrom. Chrom. (MG132)
RPL37 2 -0.490 0.720
KDM2B 1 -0.080 -0.260
KDM2B 1 -0.080 -0.260 0.216 0.247
RPF1 1 0.230 -0.510 -2.110 0.040
RPS4X 1 -0.950 1.940 0.112 0.452 0.011 -0.578 -0.183
RPS4XP21 1 0.112 0.452 0.011 -0.578 -0.183
RPS4Y1 1 1.240 -0.920 0.112 0.452 0.011 -0.578 -0.183
RNASEL 1 -0.830 1.400 1.079 -0.385 0.549 0.456
RPL8 1 -0.920 1.530 -0.405 0.713 -0.405 0.104
RPL9 1 -1.480 2.520 0.398 -0.050 1.005 0.149 0.362
RPL23A 1 -0.860 1.150 -0.679 -1.315 -0.216 -0.451 -0.096
RPL23A 1 -0.860 1.150
ERI1 0 -0.350 0.290
SBDS 0 0.910 -0.950 -0.390 -0.228 0.247
PTCD3 0 0.250 -0.690 0.583 0.046 0.299 0.113 0.535
ERAL1 0 1.440 -1.020 -0.318 -0.254 0.063 -0.374
RPS11 0 -0.580 0.760 0.454 0.798 0.102 -0.014 0.194
RPL11 0 -0.210 0.230 0.115 0.398 0.883 -0.361 -0.495
MRPL16 0 1.390 -0.930 -0.937 -0.513 -0.279 0.321
IMP3 0 -0.960 0.930 -0.735 -0.439
MRPS17 0 0.900 -0.280 0.363 -0.035 0.223 -0.123 0.134
MRPL20 0 1.630 -1.040 -0.249 0.304 -0.003 -0.143
MRPS6 0 1.470 -0.700 0.004 0.075 -0.024

PTM Sites:

 Back to Protein Results
Gene name PTM type PTM site UV UV (MG132) Sequence
ERI1 Ubiquitylation K92 0.194 _LSEFK(gl)LETR_
IMP3 Ubiquitylation K117 -0.515 _RLPTVLLK(gl)_
KDM2B Ubiquitylation K129 -0.632 _DVK(gl)LLVGSR_
KDM2B Phosphorylation S357 -0.521 -0.434 _SSS(ph)PTAGPSTEGAEGPEEK_
KDM2B Phosphorylation S394 1.119 1.347 _ELS(ph)KELNHEIQR_
KDM2B Phosphorylation S443 2.646 _APKPPTDGS(ph)TSPTSTPSEDQEALGK_
KDM2B Phosphorylation S458 1.030 _HQLGPS(ph)LRSPPR_
KDM2B Phosphorylation S461 0.284 _HQLGPSLRS(ph)PPR_
KDM2B Phosphorylation S472 -0.918 -1.112 _VISRPPPS(ph)VSPPK_
KDM2B Phosphorylation S474 -0.740 -1.153 _VISRPPPSVS(ph)PPK_
MRPL20 Ubiquitylation K114 -1.531 -0.669 _TFK(gl)SLAALASR_
RNASEL Phosphorylation S21 0.047 -0.107 _YIASVQGSTPS(ph)PR_
RNASEL Ubiquitylation K94 -0.527 _SVELNPTQK(gl)DLVLK_
RNASEL Ubiquitylation K106 0.667 _IAELLCK(gl)NDVTDGR_
RNASEL Ubiquitylation K776 -0.046 -0.521 _NADSEIK(gl)HSTPSPTR_
RNASEL Phosphorylation S788 0.362 -0.041 _YSLS(ph)PSK_
RNASEL Phosphorylation S796 0.553 0.575 _SYKYS(ph)PK_
RNASEL Phosphorylation S955 -0.786 0.030 _FESPATGILS(ph)PR_
RNASEL Phosphorylation S1160 -1.328 _NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK_
RNASEL Ubiquitylation K1220 0.641 _GIGNVK(gl)ILR_
RNASEL Phosphorylation T1396 -0.510 -0.398 _ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR_
RNASEL Phosphorylation T1399 -0.665 _ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR_
RNASEL Phosphorylation S1400 -0.440 0.082 _ELVGPPLAETVFT(ph)PKTS(ph)PENVQDR_
RNASEL Phosphorylation S1456 0.018 0.508 _SGSSFVHQAS(ph)FK_
RNASEL Phosphorylation S1573 0.499 _CVACQNPDKPS(ph)PSTSVPAPASFK_
RNASEL Ubiquitylation K1963 -0.768 _STSGEGFQFGK(gl)K_
RNASEL Ubiquitylation K1964 -0.768 _STSGEGFQFGK(gl)K_
RNASEL Ubiquitylation K2061 0.441 0.872 _GLGNLK(gl)ILK_
RNASEL Phosphorylation S2250 1.539 -0.701 _EDALDDSVSSSSVHASPLAS(ph)SPVRK_
RNASEL Phosphorylation S2251 -0.023 _EDALDDSVSSSSVHASPLASS(ph)PVRK_
RNASEL Phosphorylation S2276 0.074 0.029 _SALS(ph)PSKSPAK_
RNASEL Phosphorylation S2280 0.065 0.135 _SALSPSKS(ph)PAK_
RNASEL Phosphorylation T2293 0.717 0.584 _LNQSGTSVGT(ph)DEESDVTQEEER_
RNASEL Ubiquitylation K2358 0.436 0.327 _GIGDIK(gl)ILQNYDNK_
RNASEL Ubiquitylation K2379 -0.664 0.332 _DQVLK(gl)LCANHR_
RNASEL Ubiquitylation K2396 -0.954 0.190 _ITPDMTLQNMK(gl)GTER_
RNASEL Phosphorylation S2454 0.335 0.393 _DSLIT(ph)PHVS(ph)R_
RNASEL Phosphorylation S2510 -0.171 0.107 _AVVS(ph)PPKFVFGSESVK_
RNASEL Ubiquitylation K2592 -0.298 _NSDIEQSSDSK(gl)VK_
RNASEL Ubiquitylation K2594 -0.298 _NSDIEQSSDSK(gl)VK_
RNASEL Phosphorylation T2613 -0.775 -0.709 _NLFASFPTEESSINYTFKT(ph)PEK_
RNASEL Ubiquitylation K2650 0.439 _ALATK(gl)LK_
RNASEL Phosphorylation Y2666 0.598 _NRPDY(ph)VSEEEEDDEDFETAVKK_
RNASEL Phosphorylation S2668 0.584 0.573 _NRPDYVS(ph)EEEEDDEDFETAVK_
RNASEL Phosphorylation S2804 0.874 _SIS(ph)SPSVSSETM(ox)DKPVDLSTR_
RNASEL Phosphorylation S2805 -0.018 0.448 _SISS(ph)PSVSSETMDKPVDLSTR_
RNASEL Phosphorylation S2900 -0.395 -0.513 _VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK_
RNASEL Ubiquitylation K2935 -1.498 0.007 _SGEEDEEILFK(gl)ER_
RNASEL Phosphorylation S3207 0.368 0.527 _IESFGS(ph)PK_
RPF1 Ubiquitylation K321 2.340 _SLQK(gl)GTFDSK_
RPL11 Ubiquitylation K8 -0.287 -0.982 _(ac)AQDQGEK(gl)ENPM(ox)R_
RPL11 Ubiquitylation K52 0.253 0.130 _VLEQLTGQTPVFSK(gl)AR_
RPL11 Ubiquitylation K67 0.460 0.343 _NEK(gl)IAVHCTVR_
RPL11 Ubiquitylation K78 1.198 0.854 _GAK(gl)AEEILEK_
RPL11 Ubiquitylation K85 -0.347 0.145 _AEEILEK(gl)GLK_
RPL11 Ubiquitylation K88 0.295 _AEEILEKGLK(gl)_
RPL11 Ubiquitylation K144 0.153 0.622 _PGFSIADK(gl)K_
RPL11 Ubiquitylation K145 -0.291 1.240 _PGFSIADKK(gl)R_
RPL11 Ubiquitylation K154 0.904 _TGCIGAK(gl)HR_
RPL11 Ubiquitylation K159 -0.008 0.322 _ISK(gl)EEAMR_
RPL11 Ubiquitylation K169 -0.196 _WFQQK(gl)YDGIILPGK_
RPL11 Ubiquitylation K178 -0.182 -0.325 _YDGIILPGK(gl)_
RPL23A Ubiquitylation K14 0.220 _EAPAPPK(gl)AEAK_
RPL23A Ubiquitylation K20 -1.097 0.048 _EAPAPPKAEAKAK(gl)_
RPL23A Phosphorylation T80 0.523 _IRT(ph)SPTFR_
RPL23A Phosphorylation S81 0.373 0.711 _IRTS(ph)PTFR_
RPL23A Phosphorylation T83 0.700 _IRTSPT(ph)FR_
RPL23A Ubiquitylation K89 0.996 _FPLTTESAMKK(gl)_
RPL23A Ubiquitylation K115 0.852 1.884 _K(gl)LYDIDVAK_
RPL23A Ubiquitylation K135 1.207 _VNTLIRPDGEKK(gl)_
RPL37 Ubiquitylation K10 0.908 _TKGTSSFGK(gl)R_
RPL37 Ubiquitylation K31 1.700 1.698 _AYHLQK(gl)STCGK_
RPL37 Ubiquitylation K36 0.843 1.596 _STCGK(gl)CGYPAKR_
RPL37 Ubiquitylation K52 1.015 2.413 _YNWSAK(gl)AK_
RPL8 Ubiquitylation K10 1.877 _K(gl)GAGSVFR_
RPL8 Ubiquitylation K42 0.396 _HGYIK(gl)GIVK_
RPL8 Ubiquitylation K46 0.303 _GIVK(gl)DIIHDPGR_
RPL8 Ubiquitylation K60 0.728 _GAPLAK(gl)VVFR_
RPL8 Ubiquitylation K144 0.830 _ASGNYATVISHNPETK(gl)K_
RPL8 Ubiquitylation K145 0.285 0.755 _ASGNYATVISHNPETKK(gl)_
RPL8 Ubiquitylation K149 1.440 _VK(gl)LPSGSK_
RPL8 Ubiquitylation K155 0.139 _VKLPSGSK(gl)K_
RPL8 Ubiquitylation K156 0.139 _VKLPSGSK(gl)K_
RPL8 Ubiquitylation K177 0.882 _IDK(gl)PILK(gl)AGR_
RPL8 Ubiquitylation K181 0.925 _IDK(gl)PILK(gl)AGR_
RPL8 Ubiquitylation K234 1.760 _K(gl)VGLIAAR_
RPL8 Ubiquitylation K250 1.233 _LRGTK(gl)TVQEKEN_
RPL9 Ubiquitylation K21 -0.421 _TILSNQTVDIPENVDITLK(gl)GR_
RPL9 Ubiquitylation K28 0.424 1.093 _TVIVK(gl)GPR_
RPL9 Ubiquitylation K65 1.056 _K(gl)ELATVR_
RPL9 Ubiquitylation K121 0.985 1.430 _NFLGEK(gl)YIR_
RPL9 Ubiquitylation K174 0.888 _K(gl)FLDGIYVSEK_
RPS11 Ubiquitylation K12 0.232 0.128 _AYQK(gl)QPTIFQNK_
RPS11 Ubiquitylation K20 0.259 _QPTIFQNK(gl)KR_
RPS11 Ubiquitylation K21 0.376 _QPTIFQNKK(gl)_
RPS11 Ubiquitylation K30 -0.754 0.132 _VLLGETGK(gl)EKLPR_
RPS11 Ubiquitylation K32 0.802 _VLLGETGK(gl)EK_
RPS11 Ubiquitylation K38 0.844 _YYK(gl)NIGLGFK_
RPS11 Ubiquitylation K45 -0.466 0.111 _NIGLGFK(gl)TPK_
RPS11 Ubiquitylation K48 -0.007 _TPK(gl)EAIEGTYIDKK_
RPS11 Ubiquitylation K58 0.303 0.802 _EAIEGTYIDK(gl)K_
RPS11 Ubiquitylation K59 0.303 0.490 _K(gl)CPFTGNVSIR_
RPS11 Ubiquitylation K79 1.461 _ILSGVVTK(gl)MK_
RPS11 Phosphorylation S114 -0.099 _NM(ox)SVHLS(ph)PCFR_
RPS11 Ubiquitylation K144 0.061 1.035 _FNVLK(gl)VTK_
RPS4X Ubiquitylation K37 0.066 _LTGVFAPRPSTGPHK(gl)_
RPS4X Ubiquitylation K53 -0.868 1.266 _LK(gl)YALTGDEVKK_
RPS4X Ubiquitylation K62 -0.461 1.445 _YALTGDEVK(gl)K_
RPS4X Ubiquitylation K63 -0.418 1.078 _YALTGDEVKK(gl)_
RPS4X Ubiquitylation K71 0.253 1.524 _FIK(gl)IDGK_
RPS4X Ubiquitylation K106 0.430 1.339 _LIYDTK(gl)GR_
RPS4X Ubiquitylation K120 1.022 _ITPEEAK(gl)YK_
RPS4X Ubiquitylation K128 1.352 _K(gl)IFVGTK_
RPS4X Ubiquitylation K233 -1.348 -0.065 _GNK(gl)PWISLPR_
RPS4XP21 Ubiquitylation K37 0.066 _LTGVFAPRPSTGPHK(gl)_
RPS4XP21 Ubiquitylation K53 -0.868 1.266 _LK(gl)YALTGDEVKK_
RPS4XP21 Ubiquitylation K62 -0.461 1.445 _YALTGDEVK(gl)K_
RPS4XP21 Ubiquitylation K63 -0.418 1.078 _YALTGDEVKK(gl)_
RPS4XP21 Ubiquitylation K71 0.253 1.524 _FIK(gl)IDGK_
RPS4XP21 Ubiquitylation K106 0.430 1.339 _LIYDTK(gl)GR_
RPS4XP21 Ubiquitylation K120 1.022 _ITPEEAK(gl)YK_
RPS4XP21 Ubiquitylation K128 1.352 _K(gl)IFVGTK_
RPS4XP21 Ubiquitylation K233 -1.348 -0.065 _GNK(gl)PWISLPR_
RPS4Y1 Ubiquitylation K37 0.066 _LTGVFAPRPSTGPHK(gl)_
RPS4Y1 Ubiquitylation K53 -0.868 1.266 _LK(gl)YALTGDEVKK_
RPS4Y1 Ubiquitylation K62 -0.461 1.445 _YALTGDEVK(gl)K_
RPS4Y1 Ubiquitylation K63 -0.418 1.078 _YALTGDEVKK(gl)_
RPS4Y1 Ubiquitylation K71 0.253 1.524 _FIK(gl)IDGK_
RPS4Y1 Ubiquitylation K106 0.430 1.339 _LIYDTK(gl)GR_
RPS4Y1 Ubiquitylation K120 1.022 _ITPEEAK(gl)YK_
RPS4Y1 Ubiquitylation K128 1.352 _K(gl)IFVGTK_
RPS4Y1 Ubiquitylation K233 -1.348 -0.065 _GNK(gl)PWISLPR_
SBDS Phosphorylation T5 -1.684 _(ac)SIFT(ph)PTNQIR_
SBDS Ubiquitylation K35 0.900 _RFEIACYKNK(gl)_
SBDS Ubiquitylation K90 0.641 _QILTK(gl)GEVQVSDKER_
SBDS Ubiquitylation K118 -0.751 _DIATIVADK(gl)CVNPETK_
SBDS Ubiquitylation K138 1.026 _AMK(gl)DIHYSVK_
SBDS Ubiquitylation K151 0.552 _STK(gl)QQALEVIK_
SBDS Ubiquitylation K159 0.900 _QQALEVIK(gl)QLK_
SBDS Ubiquitylation K226 1.011 _EIDELIKK(gl)_


.

© Copyright Svejstrup Laboratory 2015