RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HMGA1	2	-0.300	0.610				-1.084	-0.264
HMGA1	2	-0.300	0.610
NEIL3	1	2.830	-1.410
RPS3	1	-0.940	1.360	0.247	-0.394	0.032	-0.254	-0.093
NTHL1	0	0.810	-0.080				1.191	1.167
APEX1	0	0.630	-0.180				-0.057	-0.077
HMGA2	0	0.340	-0.490
APEX2	0	-0.680	0.420

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
APEX1	Ubiquitylation	K25	-0.227		_GAVAEDGDELRTEPEAKK(gl)_
APEX1	Ubiquitylation	K58	-0.215		_TSPSGK(gl)PATLK_
APEX2	Ubiquitylation	K371	0.281	-0.420	_VQTCQNK(gl)AQVR_
APEX2	Ubiquitylation	K482	-0.126		_TVK(gl)KPGPNLGR_
HMGA1	Phosphorylation	S2	-0.266	1.155	_(ac)S(ph)ESSSKS(ph)SQPLASK_
HMGA1	Phosphorylation	S4		0.519	_(ac)SES(ph)SSKS(ph)SQPLASK_
HMGA1	Phosphorylation	S5	0.398	0.365	_(ac)SESS(ph)SKSSQPLASK_
HMGA1	Phosphorylation	S6	0.475	0.368	_(ac)SESSS(ph)KSSQPLASK_
HMGA1	Ubiquitylation	K7	0.088	0.752	_(ac)SESSSK(gl)SSQPLASK_
HMGA1	Phosphorylation	S8	2.198	2.240	_(ac)SESSSKS(ph)SQPLASK_
HMGA1	Phosphorylation	S9	1.976	2.155	_(ac)SESSSKSS(ph)QPLASK_
HMGA1	Ubiquitylation	K15	0.114	-0.136	_SSQPLASK(gl)QEKDGTEK_
HMGA1	Ubiquitylation	K18	0.073	-0.136	_SSQPLASKQEK(gl)_
HMGA1	Phosphorylation	S36	-1.043	-0.690	_KQPPVS(ph)PGTALVGSQK_
HMGA1	Phosphorylation	S44	-0.035	0.111	_KQPPVSPGTALVGS(ph)QKEPSEVPTPK_
HMGA1	Ubiquitylation	K46	-1.742		_KQPPVSPGTALVGSQK(gl)EPSEVPTPK_
HMGA1	Phosphorylation	S49	-2.923	0.166	_KQPPVSPGTALVGSQKEPS(ph)EVPTPK_
HMGA1	Phosphorylation	T53	-2.612	-2.477	_KQPPVSPGTALVGSQKEPSEVPT(ph)PK_
HMGA1	Phosphorylation	S102	-0.522	-0.117	_KLEKEEEEGISQES(ph)SEEEQ_
HMGA1	Phosphorylation	S103		0.370	_EEEEGISQESS(ph)EEEQ_
HMGA2	Phosphorylation	S44	-0.564	-0.762	_KQQQEPTGEPS(ph)PK_
HMGA2	Phosphorylation	S105	-0.055	-0.046	_KPAQEETEETSSQES(ph)AEED_
NEIL3	Ubiquitylation	K13		-1.903	_VEGPGCTLNGEK(gl)IR_
NEIL3	Ubiquitylation	K291		-0.197	_ENPQHVDICK(gl)LPTR_
RPS3	Ubiquitylation	K7	-0.351	0.640	_(ac)AVQISK(gl)K(gl)R_
RPS3	Ubiquitylation	K8	-0.271	0.892	_(ac)AVQISK(gl)K(gl)R_
RPS3	Ubiquitylation	K10	-0.280	0.954	_K(gl)FVADGIFK_
RPS3	Ubiquitylation	K62	0.377	1.170	_TQNVLGEK(gl)GRR_
RPS3	Ubiquitylation	K75	0.306	0.997	_IRELTAVVQK(gl)R_
RPS3	Ubiquitylation	K90	0.875	0.887	_FGFPEGSVELYAEK(gl)VATR_
RPS3	Ubiquitylation	K132	2.406	1.406	_FIMESGAK(gl)GCEVVVSGK_
RPS3	Ubiquitylation	K141	0.299	1.362	_GCEVVVSGK(gl)LR_
RPS3	Ubiquitylation	K185		1.424	_QGVLGIK(gl)VK_
RPS3	Ubiquitylation	K197	-0.785	0.209	_IMLPWDPTGK(gl)_
RPS3	Ubiquitylation	K202		-0.633	_K(gl)PLPDHVSIVEPK_
RPS3	Phosphorylation	T220	-0.052	-0.022	_DEILPT(ph)TPISEQK_
RPS3	Phosphorylation	T221	-0.107	0.074	_DEILPTT(ph)PISEQK_
RPS3	Ubiquitylation	K230	1.186	-0.281	_GGK(gl)PEPPAM(ox)PQPVPTA_