RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SPAG16	1	1.110	-0.460
INPP5E	1	2.910	-1.420
PIK3R4	1	1.400	-0.950	1.537			-1.555	0.077
PIK3C3	0	-0.260	0.520
ATG16L1	0	0.400	-0.280
AMBRA1	0	1.670	-0.450	-1.226				-2.109
WDR35	0	0.320	-0.150
SEPT7	0
DYNC2LI1	0
MNS1	0	-0.850	1.290
CCSAP	0	-0.120	0.870
GABARAP	0	-1.090	2.300
ATG7	0	-0.140	0.720	0.708
GNAT3	0	1.110	-0.500	-0.166	-0.094	0.032	0.420	0.504

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AMBRA1	Ubiquitylation	K175	-0.373	0.447	_REPFAVVK(gl)TASEMER_
ATG16L1	Phosphorylation	S304	-0.317	-1.220	_S(ph)VSSFPVPQDNVDTHPGSGK_
CCSAP	Phosphorylation	S145		0.546	_TRETDKS(ph)PTSTEPR_
DYNC2LI1	Ubiquitylation	K151		-1.054	_TNAK(gl)AVSEMR_
GABARAP	Ubiquitylation	K13	-0.569		_FVYKEEHPFEK(gl)R_
INPP5E	Phosphorylation	S99	0.650	0.637	_FRGS(ph)QEDLEAR_
MNS1	Ubiquitylation	K17	0.320		_ELEK(gl)KLK_
MNS1	Ubiquitylation	K18	0.320		_ELEK(gl)KLK_
PIK3C3	Ubiquitylation	K29		0.271	_IGSLEGK(gl)R_
PIK3C3	Ubiquitylation	K158	-1.333		_VWPNVEADGSEPTK(gl)TPGR_
PIK3C3	Ubiquitylation	K209	-1.012		_EIEMINESEK(gl)R_
PIK3C3	Ubiquitylation	K287		-1.261	_SGPSDHDLK(gl)PNAATR_
SEPT7	Ubiquitylation	K88	0.195		_IK(gl)KTVQVEQSK_
SEPT7	Ubiquitylation	K209	0.315	0.490	_ADTLTPEECQQFKK(gl)_
SEPT7	Ubiquitylation	K213	1.008	1.111	_QIMK(gl)EIQEHK_
SEPT7	Ubiquitylation	K219	0.414	0.573	_EIQEHK(gl)IK_
SEPT7	Ubiquitylation	K333		0.134	_GQLTK(gl)SPLAQMEEERR_
SEPT7	Phosphorylation	S334	0.362	0.417	_S(ph)PLAQMEEERR_
SEPT7	Ubiquitylation	K395	0.680		_NLEAQHK(gl)ELEEK_
SEPT7	Phosphorylation	T426		0.290	_ILEQQNSSRT(ph)LEK_
SPAG16	Ubiquitylation	K214	1.658		_LINDLK(gl)GLK_
WDR35	Ubiquitylation	K51		0.094	_LETQTDDAK(gl)LR_
WDR35	Ubiquitylation	K590		0.254	_VTDSTGQQVVGELLK(gl)LER_
WDR35	Ubiquitylation	K680		-0.600	_ALIEK(gl)VGIK_
WDR35	Ubiquitylation	K1086		0.785	_AFGTCSK(gl)AFIK_