bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Category

Results for the Category
mRNA decay complex (UPF1, UPF2, UPF3B, DCP2, XRN1, XRN2, EXOSC2, EXOSC4, EXOSC10, PARN)
(822)

RNAi screen result RNAPII IP (MG132) CSB IP CSB IP (MG132) Chrom. Chrom. (MG132) Ubi /Phospo Ubi /Phospho (MG132)
W

Protein Results:

Results for post-translational modifications (below)
Gene name MGoogle Score RNAi high RNAi low RNAPII-IP (MG132) CSB-IP CSB-IP (MG132) Chrom. Chrom. (MG132)
UPF1 0 -0.362 -0.954 -0.781 -0.966 -0.333
XRN2 0 1.050 -0.930 -2.506 -1.121 -0.161 -0.293 -0.304
XRN1 0 1.680 -1.120
XRN1 0 1.680 -1.120 -0.304 -0.943 0.164
UPF3B 0 -0.820 0.890 -0.652 -0.447
EXOSC2 0 -0.410 0.130 -0.167 0.162 0.416 -0.803 0.148
PARN 0 -1.190 1.560 0.653 -0.013 -0.219 0.283
UPF2 0 0.020 -0.140 -0.668 -0.131
EXOSC10 0 0.160 -0.170 -0.327 -0.108 -0.734 -0.003

PTM Sites:

Back to Protein Results
Gene name PTM type PTM site UV UV (MG132) Sequence
EXOSC10 Ubiquitylation K591 -1.148 _SEVAAGVK(gl)K_
EXOSC10 Ubiquitylation K592 -1.148 _SEVAAGVK(gl)K_
EXOSC10 Ubiquitylation K680 -1.926 _GPLTVAQKK(gl)_
EXOSC10 Ubiquitylation K710 -1.867 _APVSQAAK(gl)FDPSTK_
EXOSC10 Ubiquitylation K716 -2.215 _FDPSTK(gl)IYEISNR_
EXOSC2 Ubiquitylation K70 -0.209 _LICVK(gl)ALK_
EXOSC2 Ubiquitylation K97 0.060 _WK(gl)VETNSR_
EXOSC2 Phosphorylation S175 -0.346 -0.185 _LGQGVLVQVS(ph)PSLVK_
EXOSC2 Ubiquitylation K180 -0.618 _LGQGVLVQVSPSLVK(gl)R_
PARN Phosphorylation S557 0.812 0.283 _NNS(ph)FTAPSTVGK_
PARN Phosphorylation S619 0.501 0.675 _KELS(ph)PAGSISK_
UPF1 Ubiquitylation K321 0.611 _LK(gl)ESQTQDNITVR_
UPF1 Ubiquitylation K340 -1.693 _WDLGLNKK(gl)_
UPF1 Ubiquitylation K378 -1.658 _YK(gl)GDLAPLWK_
UPF1 Ubiquitylation K638 -2.024 -0.456 _LAK(gl)MQFR_
UPF1 Ubiquitylation K790 0.647 0.880 _ITTK(gl)LLK_
UPF1 Ubiquitylation K793 -2.075 _LLK(gl)AGAKPDQIGIITPYEGQR_
UPF1 Phosphorylation S1107 0.100 0.763 _SQIDVALS(ph)QDSTYQGER_
UPF3B Ubiquitylation K196 0.208 _K(gl)TTPLLSFLK_
XRN1 Phosphorylation S814 -0.523 _ENEVQSSHHGEPPSEEHLS(ph)PQSFAM(ox)K_
XRN2 Ubiquitylation K132 0.183 _EGMEAAVEK(gl)QR_
XRN2 Phosphorylation T439 -0.332 -1.539 _RDQPAFTPSGILT(ph)PHALGSR_
XRN2 Phosphorylation S448 0.425 0.037 _NS(ph)PGSQVASNPR_
XRN2 Phosphorylation S473 0.104 -0.751 _MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIK_
XRN2 Phosphorylation S475 0.436 _MQNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_
XRN2 Ubiquitylation K493 -1.223 _MQNNSSPSISPNTSFTSDGSPSPLGGIK(gl)R_
XRN2 Phosphorylation S499 -1.444 _AEDS(ph)DSEPEPEDNVR_
XRN2 Ubiquitylation K533 0.431 _NKFDVDAADEK(gl)FR_


© Copyright Svejstrup Laboratory 2015