bioLOGIC-db

bioLOGIC Data

Query: GEMIN2

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
GEMIN2	0	-0.444	0.620	-0.610

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
GEMIN2	Phosphorylation	S81		-0.444	_KQS(ph)VNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVR_

ProteomicsDB-GEMIN2 »

Protein-protein Interactions for GEMIN2

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait ANKRD26	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait BAX	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CCT4	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CERK	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GEMIN5	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GEMIN7	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NCBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NDC80	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NLRP3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RCC1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SMN1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SNRNP70	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TUBG1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait YAP1	Cat. description	Hein, Mann, Cell 2015

Protein Domains in GEMIN2

	Domain name	Domain Description	TC-NER relevance -log10(p-value)

Protein complexes (CORUM database) featuring GEMIN2

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	1751	SMN complex	Database	0.37
Category members	Corum	3284	SMN complex (GEMIN5,2,3,4, SMN)	Database	0.23
Category members	Corum	3298	SMN complex (GEMIN2,5, SMN)	Database	0.2
Category members	Corum	1746	SMN containing complex	Database	0.19
Category members	Corum	1143	SMN complex	Database	0.14
Category members	Corum	1752	SMN complex	Database	0.11
Category members	Corum	1142	SMN complex	Database	0
Category members	Corum	1745	SMN complex	Database	0
Category members	Corum	1749	SMN-PolII-RHA complex	Database	0
Category members	Corum	3118	SMN1-SIP1-SNRP complex	Database	0
Category members	Corum	824	Anti-SMN protein complex	Database	0
Category members	Corum	832	Anti-Sm protein complex	Database	0

Categories featuring GEMIN2

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Pathway	Pathway_771	REACTOME_METABOLISM_OF_RNA	0	INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0005829	cytosol	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	GO Category	GO:0016070	RNA metabolic process	Database	INF
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	GO Category	GO:0008380	RNA splicing	Database	10.77
Category members	Pathway	Pathway_887	REACTOME_METABOLISM_OF_NON_CODING_RNA	0	4.38
Category members	GO Category	GO:0005681	spliceosomal complex	Database	3.88
Category members	GO Category	GO:0006397	mRNA processing	Database	3.76
Category members	GO Category	GO:0000375	RNA splicing, via transesterification reactions	Database	0.73
Category members	GO Category	GO:0000245	spliceosomal complex assembly	Database	0.39
Category members	GO Category	GO:0005622	intracellular	Database	0.32
Category members	GO Category	GO:0000387	spliceosomal snRNP assembly	Database	0.04
Category members	GO Category	GO:0034660	ncRNA metabolic process	Database	0