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Query: DDX39B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
DDX39B 0 3.048 0.110 -0.420 0.154 -0.871 -0.414 -0.071 0.085
DDX39B 0 3.048 0.110 -0.420 0.448 0.390 -0.100

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
DDX39B Ubiquitylation K349 1.170 1.013 _YQQFK(gl)DFQR_
DDX39B Ubiquitylation K36 0.582 0.569 _DVK(gl)GSYVSIHSSGFR_
DDX39B Ubiquitylation K198 1.299 0.562 _NK(gl)SLNLK_
DDX39B Ubiquitylation K53 -0.435 0.410 _DFLLK(gl)PELLR_
DDX39B Ubiquitylation K177 0.132 _KDEEVLK(gl)K_
DDX39B Phosphorylation T187 0.152 -0.169 _NCPHIVVGT(ph)PGR_
DDX39B Phosphorylation Y13 -0.190 -0.230 _AENDVDNELLDY(ph)EDDEVETAAGGDGAEAPAK_
DDX39B Ubiquitylation K203 0.960 -0.230 _SLNLK(gl)HIK_
DDX39B Ubiquitylation K146 0.042 _ELAFQISK(gl)EYER_
DDX39B Ubiquitylation K153 0.222 _FSK(gl)YMPNVK_
DDX39B Ubiquitylation K178 -0.293 _K(gl)NCPHIVVGTPGR_

Background Information for DDX39B:


Pubmed-DDX39B »
Uniprot-DDX39B »
Biogrid-DDX39B »
ProteomicsDB-DDX39B »

Tumorportal-DDX39B »
COSMIC-DDX39B »
GenomeRNAi-DDX39B »
Genecards-DDX39B


Protein-protein Interactions for DDX39B
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in DDX39B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members P-loop_NTPase IPR027417 2.83
Category members Helicase_C IPR001650 2.48
Category members Helicase_ATP-bd IPR014001 2.48
Category members Helicase/UvrB_dom IPR006935 0.78
Category members DEAD/DEAH_box_helicase_dom IPR011545 0.35
Category members RNA_helicase_DEAD_Q_motif IPR014014 0.24


Protein complexes (CORUM database) featuring DDX39B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 351 Spliceosome Database 9.3
Category members Corum 770 TREX complex Database 1.46
Category members Corum 785 Exon junction complex Database 0.29


Categories featuring DDX39B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members Pathway Pathway_851 KEGG_SPLICEOSOME 0 7.94
Category members GO Category GO:0000398 mRNA splicing, via spliceosome Database 7.06
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0006406 mRNA export from nucleus Database 4.09
Category members GO Category GO:0005681 spliceosomal complex Database 3.88
Category members GO Category GO:0004386 helicase activity Database 2.49
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0046784 viral mRNA export from host cell nucleus Database 1.46
Category members GO Category GO:0004004 ATP-dependent RNA helicase activity Database 1.43
Category members GO Category GO:0032786 positive regulation of DNA-dependent transcription, elongation Database 1.27
Category members GO Category GO:0000346 transcription export complex Database 1.18
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0008026 ATP-dependent helicase activity Database 0.79
Category members GO Category GO:0000245 spliceosomal complex assembly Database 0.39
Category members GO Category GO:0043008 ATP-dependent protein binding Database 0.29
Category members GO Category GO:0010501 RNA secondary structure unwinding Database 0.29
Category members GO Category GO:0016787 hydrolase activity Database 0.22
Category members GO Category GO:0008186 RNA-dependent ATPase activity Database 0.07
Category members GO Category GO:0005687 U4 snRNP Database 0
Category members GO Category GO:0005688 U6 snRNP Database 0
Category members GO Category GO:0017070 U6 snRNA binding Database 0


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