RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CDK16	1	-1.400	2.950
CDK16	1	-1.400	2.950
CDK16	1	-1.400	2.950				-0.510	0.013
YIPF3	1	2.390	-1.250
APH1B	1	-1.760	3.070
GNAS	0	0.840	-0.750
GNAS	0	0.840	-0.750
GNAS	0	0.840	-0.750	-0.166	-0.094	0.032	0.420	0.504
RAB11A	0	1.130	-0.130	0.324			0.697	0.458
RAB11A	0	1.130	-0.130
NRSN2	0	0.690	-0.340
C14orf1	0	-0.770	0.690				0.403	0.017
AP1AR	0	1.030	-1.110
SCAMP2	0	-0.920	1.200				0.963	-0.915
TMEM168	0	-1.040	0.870
TGOLN2	0	0.900	-0.640
AIMP1	0	-0.220	0.620	-0.699			-0.552	-0.431
PLEKHF2	0	-1.300	2.220
AP3S1	0	1.210	-1.210	-1.064			-0.141
CHP1	0	0.130	0.190				-0.105	0.192
AP1G2	0	0.560	-0.680				0.454	1.062

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AIMP1	Ubiquitylation	K9	-0.014	0.834	_MANNDAVLK(gl)R_
AIMP1	Ubiquitylation	K35	-1.334		_EK(gl)AILQATLR_
AIMP1	Ubiquitylation	K47	0.454	0.365	_AILQATLREEKK(gl)_
AIMP1	Ubiquitylation	K312	0.335	0.619	_AQTMSNSGIK(gl)_
AP1AR	Phosphorylation	T228	0.813	0.785	_SKT(ph)EEDILR_
AP1G2	Ubiquitylation	K30		-0.209	_EVIQK(gl)ECAHIR_
AP3S1	Ubiquitylation	K18	-0.109	0.558	_LSK(gl)FYQPYSEDTQQQIIR_
AP3S1	Ubiquitylation	K166	-0.248		_AVSAVK(gl)NMNLPEIPR_
AP3S1	Ubiquitylation	K193	-0.977		_VPNLPSFK(gl)_
APH1B	Ubiquitylation	K102		-0.148	_ASEGLK(gl)SINPGETAPSMR_
CDK16	Phosphorylation	S110		0.566	_RQLS(ph)MTLR_
CDK16	Phosphorylation	S176	-0.089	-0.530	_M(ox)GS(ph)DGESDQASATSSDEVQS(ph)PVR_
CDK16	Phosphorylation	S193	-0.305	-0.461	_MGS(ph)DGESDQASATSSDEVQS(ph)PVR_
CDK16	Phosphorylation	S208	0.508	0.023	_KIS(ph)TEDINK_
CDK16	Phosphorylation	T209		0.502	_KIS(ph)TEDINKR_
CDK16	Phosphorylation	S217	-0.051	0.003	_RLS(ph)LPADIR_
CDK16	Phosphorylation	S236	-0.603	-0.685	_LTLNS(ph)PIFDKPLSR_
CDK16	Phosphorylation	S236		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK16	Ubiquitylation	K243		0.512	_EVSLLK(gl)DLK_
CDK16	Phosphorylation	S249		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK16	Phosphorylation	S251	0.931	0.143	_RVS(ph)LSEIGFGK_
CDK16	Phosphorylation	S253		-0.670	_RVSLS(ph)EIGFGK_
CDK16	Phosphorylation	S385		0.649	_HSSIS(ph)PVRLPLNSSLGAELSR_
CDK16	Phosphorylation	S420	0.004	-0.202	_ES(ph)KGSPVFLPR_
CDK16	Phosphorylation	S423	-0.155	-0.297	_GS(ph)PVFLPR_
CDK16	Phosphorylation	T514	0.364	0.570	_DSKPIALKEEIVT(ph)PK_
CDK16	Phosphorylation	S681	-2.532	-2.051	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK16	Phosphorylation	S685		-2.729	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK16	Phosphorylation	T692	-0.765	-1.849	_AIT(ph)PPQQPYK_
CDK16	Phosphorylation	S1082	-1.661	-0.980	_KETTSGTSTEPVKNS(ph)SPAPPQPAPGK_
CDK16	Phosphorylation	S1083	-1.093	-1.330	_NSS(ph)PAPPQPAPGK_
CDK16	Phosphorylation	T1244		-0.956	_RT(ph)PTMPQEEAAACPPHILPPEK_
GNAS	Ubiquitylation	K8	0.430	0.328	_GCLGNSK(gl)TEDQRNEEK(gl)AQR_
GNAS	Ubiquitylation	K17	-0.011		_GCLGNSK(gl)TEDQRNEEK(gl)AQR_
GNAS	Ubiquitylation	K32	0.249	-0.446	_QLQK(gl)DKQVYR_
GNAS	Ubiquitylation	K58	-1.182	0.161	_STIVK(gl)QM(ox)R_
GNAS	Ubiquitylation	K92	-1.333	-0.290	_ATK(gl)VQDIKNNLK_
GNAS	Ubiquitylation	K97		0.076	_VQDIK(gl)NNLK_
GNAS	Ubiquitylation	K167	-1.721		_LHALK(gl)LR_
GNAS	Ubiquitylation	K301	-0.955	-0.198	_QDLLAEK(gl)VLAGK_
GNAS	Ubiquitylation	K308		-0.472	_SK(gl)IEDYFPEFAR_
NRSN2	Ubiquitylation	K21	-0.994	-0.239	_GPSVEDGK(gl)WYGVR_
PLEKHF2	Phosphorylation	S226	0.426	0.190	_SDS(ph)YSQSLK_
RAB11A	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11A	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11A	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11A	Ubiquitylation	K224	-0.187	0.901	_IVSQK(gl)QMSDRR_
SCAMP2	Ubiquitylation	K95	0.037	0.189	_QQEELDRK(gl)AAELER_
TGOLN2	Phosphorylation	S70	-0.275	-0.051	_S(ph)SAEAQTPEDTPNK_
TGOLN2	Phosphorylation	S71	-0.489	-0.509	_DSPSKSS(ph)AEAQTPEDTPNK_
TGOLN2	Phosphorylation	T296	-0.483	-0.157	_T(ph)ESGEETDLISPPQEEVK_
TGOLN2	Phosphorylation	S298	-0.214	-0.103	_TES(ph)GEETDLISPPQEEVK_
TMEM168	Ubiquitylation	K347		0.146	_IMASK(gl)GMR_
YIPF3	Ubiquitylation	K92	-0.281	0.994	_GFK(gl)GQLSR_
YIPF3	Ubiquitylation	K108	-0.347	0.335	_QVADQMWQAGK(gl)R_