RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RB1CC1	0	-0.320	0.680
RB1CC1	0	-0.320	0.680		-1.155	-0.488
VMP1	0	-1.240	2.060
ATG101	0	-0.170	-0.710
SQSTM1	0	-0.860	1.770	-2.165			-2.063	-1.741
SQSTM1	0	-0.440	0.530	-2.165			-2.063	-1.741
ATG13	0	-0.790	0.540	-0.270	0.450	0.139
ULK1	0	0.740	-0.520
NBR1	0	0.470	-0.040	-2.408
ATG7	0	-0.140	0.720	0.708

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATG101	Ubiquitylation	K84		-0.706	_VVGEFK(gl)DALR_
NBR1	Ubiquitylation	K464	-0.807	-2.087	_LSHK(gl)GQQFGPR_
NBR1	Ubiquitylation	K515	-0.852		_TDDLTCQQEETFLLAK(gl)EER_
NBR1	Ubiquitylation	K539	-0.515	-0.635	_QLGEVTEQTEGTAACIPQKAK(gl)_
NBR1	Ubiquitylation	K627	-0.779	-1.425	_ALPDSMVSVK(gl)R_
NBR1	Ubiquitylation	K767	-1.436		_GAEGK(gl)PGVEAGQEPAEAGER_
RB1CC1	Phosphorylation	S222	0.084	0.562	_LDS(ph)LPEHEDSEK_
RB1CC1	Phosphorylation	S237	-0.464	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	T238	-0.376	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	S257	-0.819		_TTNESLLTS(ph)FPK_
RB1CC1	Phosphorylation	S266		0.766	_SVEHVS(ph)PDTADAESGK_
RB1CC1	Phosphorylation	S624	-0.685	-0.445	_AAQS(ph)LDEM(ox)SQTITDLLSEQK_
SQSTM1	Ubiquitylation	K13	0.150	0.302	_AYLLGK(gl)EDAAR_
SQSTM1	Phosphorylation	S28		-0.721	_RFSFCCS(ph)PEPEAEAEAAAGPGPCER_
SQSTM1	Ubiquitylation	K141	-0.915		_YK(gl)CSVCPDYDLCSVCEGK_
SQSTM1	Ubiquitylation	K157	-0.852	-0.677	_CSVCPDYDLCSVCEGK(gl)GLHR_
SQSTM1	Phosphorylation	T269	-0.681	-0.421	_LT(ph)PVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S272	0.171	0.044	_LTPVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S332		-0.007	_IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK_
SQSTM1	Ubiquitylation	K420	-1.122	-0.061	_LLQTK(gl)NYDIGAALDTIQYSK_
SQSTM1	Ubiquitylation	K435	-1.352	-0.780	_NYDIGAALDTIQYSK(gl)HPPPL_
ULK1	Phosphorylation	S450	-0.237	-0.173	_NLQS(ph)PTQFQTPR_
ULK1	Phosphorylation	T468	-0.247	0.456	_SGST(ph)SPLGFAR_
ULK1	Phosphorylation	S469	0.035	0.470	_SGSTS(ph)PLGFAR_
ULK1	Phosphorylation	S623	-0.793	-0.874	_NPLPPILGS(ph)PTK_
ULK1	Phosphorylation	T625	-0.547	-0.776	_NPLPPILGSPT(ph)K_
ULK1	Phosphorylation	T636		0.087	_T(ph)PSSQNLLALLAR_
ULK1	Phosphorylation	S638	-0.154	0.598	_TPS(ph)SQNLLALLAR_
VMP1	Ubiquitylation	K245		0.854	_AK(gl)LAVQK_