bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: VMP1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
VMP1 0 2.914 -1.240 2.060

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
VMP1 Ubiquitylation K245 0.854 _AK(gl)LAVQK_

Background Information for VMP1:


Pubmed-VMP1 »
Uniprot-VMP1 »
Biogrid-VMP1 »
ProteomicsDB-VMP1 »

Tumorportal-VMP1 »
COSMIC-VMP1 »
GenomeRNAi-VMP1 »
Genecards-VMP1


Protein-protein Interactions for VMP1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CDH13 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPEP1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MAS1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in VMP1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SNARE_assoc IPR015414 0


Protein complexes (CORUM database) featuring VMP1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring VMP1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0005783 endoplasmic reticulum Database 0.62
Category members GO Category GO:0034329 cell junction assembly Database 0.29
Category members GO Category GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane Database 0.05
Category members GO Category GO:0000407 pre-autophagosomal structure Database 0
Category members GO Category GO:0000421 autophagic vacuole membrane Database 0
Category members GO Category GO:0006914 autophagy Database 0
Category members GO Category GO:0007566 embryo implantation Database 0
Category members GO Category GO:0010506 regulation of autophagy Database 0
Category members GO Category GO:0016337 cell-cell adhesion Database 0


.

© Copyright Svejstrup Laboratory 2015