RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATG9A	1	-0.430	0.730					1.551
GABARAPL2	0	1.830	-0.990
VMP1	0	-1.240	2.060
ATG16L1	0	0.400	-0.280
CHMP4A	0	-0.580	0.780
TM9SF1	0	-0.420	0.130
RPN2	0	1.000	-0.610
RPN2	0	1.000	-0.610	0.994
STX17	0	-1.260	1.910
WIPI2	0	0.250	-0.250
GABARAP	0	-1.090	2.300
ENTPD4	0	-0.780	0.800

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATG16L1	Phosphorylation	S304	-0.317	-1.220	_S(ph)VSSFPVPQDNVDTHPGSGK_
ATG9A	Phosphorylation	S18	0.284	0.175	_LEASYSDS(ph)PPGEEDLLVHVAEGSK_
ATG9A	Phosphorylation	S654	-0.181		_S(ph)FSPLQPGQAPTGR_
ATG9A	Phosphorylation	S656	-0.724	-0.246	_SFS(ph)PLQPGQAPTGR_
ATG9A	Phosphorylation	S828	-0.863	-0.673	_HPEPVPEEGS(ph)EDELPPQVHKV_
CHMP4A	Ubiquitylation	K115	-0.705		_TMELAAQSMKK(gl)_
ENTPD4	Ubiquitylation	K348		-0.267	_IFANTIQK(gl)NR_
ENTPD4	Ubiquitylation	K487		-0.988	_LK(gl)YQCFK_
GABARAP	Ubiquitylation	K13	-0.569		_FVYKEEHPFEK(gl)R_
GABARAPL2	Ubiquitylation	K20		-0.292	_CVESAK(gl)IR_
GABARAPL2	Ubiquitylation	K24	-0.237	-0.668	_AK(gl)YPDRVPVIVEK_
RPN2	Ubiquitylation	K70		1.069	_K(gl)ACTYIR_
RPN2	Ubiquitylation	K403		-0.045	_VTYPAKAK(gl)_
RPN2	Ubiquitylation	K627	-0.931	0.454	_MLAQQAVK(gl)R_
STX17	Ubiquitylation	K299	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX17	Ubiquitylation	K300	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
TM9SF1	Ubiquitylation	K115	-0.705		_TMELAAQSMKK(gl)_
VMP1	Ubiquitylation	K245		0.854	_AK(gl)LAVQK_
WIPI2	Ubiquitylation	K223		-1.289	_LATASEK(gl)GTVIR_
WIPI2	Ubiquitylation	K341		-0.847	_NICSLATIQK(gl)IPR_
WIPI2	Phosphorylation	S413	0.225	0.402	_GTYVPSS(ph)PTR_
WIPI2	Phosphorylation	T415	0.157		_GTYVPSSPT(ph)R_