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Query: SMNDC1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMNDC1 0 -3.128 0.060 -0.120 -0.870 -0.139 -0.838 -0.317

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMNDC1 Phosphorylation S201 -0.733 -0.231 _RSIFAS(ph)PESVTGK_

Background Information for SMNDC1:


Pubmed-SMNDC1 »
Uniprot-SMNDC1 »
Biogrid-SMNDC1 »
ProteomicsDB-SMNDC1 »

Tumorportal-SMNDC1 »
COSMIC-SMNDC1 »
GenomeRNAi-SMNDC1 »
Genecards-SMNDC1


Protein-protein Interactions for SMNDC1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait LDHD Cat. description Hein, Mann, Cell 2015


Protein Domains in SMNDC1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Tudor IPR002999 0.28
Category members Survival_motor_neuron IPR010304 0


Protein complexes (CORUM database) featuring SMNDC1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 351 Spliceosome Database 9.3
Category members Corum 2755 17S U2 snRNP Database 1.77


Categories featuring SMNDC1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members Pathway Pathway_851 KEGG_SPLICEOSOME 0 7.94
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0005681 spliceosomal complex Database 3.88
Category members GO Category GO:0006397 mRNA processing Database 3.76
Category members GO Category GO:0006915 apoptotic process Database 2.12
Category members GO Category GO:0000375 RNA splicing, via transesterification reactions Database 0.73
Category members GO Category GO:0015030 Cajal body Database 0.04


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