bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: SMARCAL1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMARCAL1 1 3.158 -1.220 1.410 1.748

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence

Background Information for SMARCAL1:


Pubmed-SMARCAL1 »
Uniprot-SMARCAL1 »
Biogrid-SMARCAL1 »
ProteomicsDB-SMARCAL1 »

Tumorportal-SMARCAL1 »
COSMIC-SMARCAL1 »
GenomeRNAi-SMARCAL1 »
Genecards-SMARCAL1


Protein-protein Interactions for SMARCAL1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ADC Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DCAF7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SMARCAL1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SNF2_N IPR000330 3.38
Category members P-loop_NTPase IPR027417 2.83
Category members Helicase_C IPR001650 2.48
Category members Helicase_ATP-bd IPR014001 2.48


Protein complexes (CORUM database) featuring SMARCAL1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SMARCAL1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members DDR Literature pubmedid:24332808 Marechal et al., 2014 RPA-mediated recruitment INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members Pathway Pathway_865 PID_ATR_PATHWAY 0 3.46
Category members GO Category GO:0004386 helicase activity Database 2.49
Category members GO Category GO:0008094 DNA-dependent ATPase activity Database 2.31
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members GO Category GO:0016568 chromatin modification Database 0.18
Category members GO Category GO:0036310 annealing helicase activity Database 0.01
Category members GO Category GO:0000733 DNA strand renaturation Database 0
Category members GO Category GO:0006259 DNA metabolic process Database 0


.

© Copyright Svejstrup Laboratory 2015