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Query: HMGN1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
HMGN1 2 3.858 -0.050 0.130

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
HMGN1 Phosphorylation S8 0.243 0.475 _VSS(ph)AEGAAKEEPK_
HMGN1 Phosphorylation S99 0.293 0.342 _TEESPASDEAGEKEAKS(ph)D_
HMGN1 Phosphorylation S86 0.276 0.310 _TEES(ph)PASDEAGEKEAK_
HMGN1 Phosphorylation S7 1.696 0.085 _KVS(ph)SAEGAAKEEPK_
HMGN1 Ubiquitylation K30 1.557 _VSSAEGAAK(gl)EEPK_
HMGN1 Phosphorylation S89 0.009 _TEESPAS(ph)DEAGEKEAK_

Background Information for HMGN1:


Pubmed-HMGN1 »
Uniprot-HMGN1 »
Biogrid-HMGN1 »
ProteomicsDB-HMGN1 »

Tumorportal-HMGN1 »
COSMIC-HMGN1 »
GenomeRNAi-HMGN1 »
Genecards-HMGN1


Protein-protein Interactions for HMGN1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait MYH6 Cat. description Hein, Mann, Cell 2015
Category members IP bait PDK1 Cat. description Hein, Mann, Cell 2015


Protein Domains in HMGN1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members HMGN_fam IPR000079 0.16


Protein complexes (CORUM database) featuring HMGN1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring HMGN1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0006283 transcription-coupled nucleotide-excision repair Database 6.58
Category members GO Category GO:0003682 chromatin binding Database 6.07
Category members GO Category GO:0006325 chromatin organization Database 5.02
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0000785 chromatin Database 2.59
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0032786 positive regulation of DNA-dependent transcription, elongation Database 1.27
Category members GO Category GO:0048597 post-embryonic camera-type eye morphogenesis Database 0.63
Category members GO Category GO:0010224 response to UV-B Database 0.44
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members GO Category GO:0000720 pyrimidine dimer repair by nucleotide-excision repair Database 0.03
Category members GO Category GO:0031492 nucleosomal DNA binding Database 0.01
Category members Pathway Pathway_723 BIOCARTA_P38MAPK_PATHWAY 0 0
Category members GO Category GO:0010225 response to UV-C Database 0
Category members GO Category GO:0050678 regulation of epithelial cell proliferation Database 0


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