Results for the Category
V(D)J recombination
(GO:0033151)
| RNAi screen result | RNAPII IP (MG132) | CSB IP | CSB IP (MG132) | Chrom. | Chrom. (MG132) | Ubi /Phospo | Ubi /Phospho (MG132) |
| W | |||||||
| Gene name | MGoogle Score | RNAi high | RNAi low | RNAPII-IP (MG132) | CSB-IP | CSB-IP (MG132) | Chrom. | Chrom. (MG132) |
|---|---|---|---|---|---|---|---|---|
| HMGB1 | 2 | -1.590 | 3.400 | 2.856 | -1.899 | 0.030 | -0.792 | |
| XRCC4 | 1 | -0.240 | 0.070 | |||||
| HMGB2 | 0 | -0.350 | 0.170 | -1.810 | 0.655 | 0.285 | ||
| XRCC6 | 0 | 0.960 | -0.800 | |||||
| XRCC6 | 0 | 0.960 | -0.800 | -0.089 | -0.758 | 0.145 | 0.033 | 0.140 |
| Gene name | PTM type | PTM site | UV | UV (MG132) | Sequence |
|---|---|---|---|---|---|
| HMGB1 | Ubiquitylation | K50 | 0.651 | _WK(gl)TMSAK_ | |
| HMGB1 | Ubiquitylation | K59 | 1.001 | 0.009 | _GK(gl)FEDMAK_ |
| HMGB1 | Ubiquitylation | K114 | 0.314 | _IK(gl)GEHPGLSIGDVAK_ | |
| HMGB1 | Ubiquitylation | K127 | 0.018 | _IKGEHPGLSIGDVAK(gl)K_ | |
| HMGB1 | Ubiquitylation | K128 | -0.407 | _K(gl)LGEMWNNTAADDKQPYEK_ | |
| HMGB1 | Ubiquitylation | K157 | 0.850 | _YEK(gl)DIAAYR_ | |
| HMGB2 | Ubiquitylation | K114 | 0.323 | _IK(gl)SEHPGLSIGDTAK_ | |
| HMGB2 | Ubiquitylation | K128 | 0.363 | _K(gl)LGEMWSEQSAK_ | |
| HMGB2 | Ubiquitylation | K147 | 0.205 | -0.408 | _DKQPYEQK(gl)AAK_ |
| HMGB2 | Ubiquitylation | K150 | -0.251 | _DKQPYEQKAAK(gl)_ | |
| XRCC4 | Ubiquitylation | K178 | 0.552 | _EALETDLYK(gl)R_ | |
| XRCC4 | Ubiquitylation | K197 | 0.264 | _SLHNK(gl)LLNAAQER_ | |
| XRCC4 | Phosphorylation | S259 | -0.552 | 1.634 | _DDSIIS(ph)SLDVTDIAPSR_ |
| XRCC4 | Phosphorylation | S260 | -0.545 | 1.299 | _DDSIISS(ph)LDVTDIAPSR_ |
| XRCC4 | Phosphorylation | S320 | 0.439 | 1.683 | _KEHISAENM(ox)S(ph)LETLR_ |
| XRCC6 | Phosphorylation | S27 | 0.932 | 0.873 | _TEGDEEAEEEQEENLEAS(ph)GDYK_ |
| XRCC6 | Ubiquitylation | K114 | -0.534 | -0.728 | _NIYVLQELDNPGAK(gl)R_ |
| XRCC6 | Ubiquitylation | K123 | -0.756 | _ILELDQFK(gl)GQQGQK_ | |
| XRCC6 | Ubiquitylation | K129 | 0.079 | -0.683 | _ILELDQFKGQQGQK(gl)R_ |
| XRCC6 | Ubiquitylation | K182 | -1.603 | _IMLFTNEDNPHGNDSAK(gl)ASR_ | |
| XRCC6 | Ubiquitylation | K282 | -2.587 | _ALK(gl)PPPIK_ | |
| XRCC6 | Ubiquitylation | K287 | -1.436 | -2.286 | _ALKPPPIK(gl)LYR_ |
| XRCC6 | Ubiquitylation | K299 | -0.535 | -0.792 | _ETNEPVKTK(gl)TR_ |
| XRCC6 | Ubiquitylation | K317 | -0.584 | -0.964 | _TFNTSTGGLLLPSDTK(gl)R_ |
| XRCC6 | Ubiquitylation | K331 | -1.666 | _QIILEK(gl)EETEELKR_ | |
| XRCC6 | Ubiquitylation | K338 | -1.479 | -1.003 | _QIILEKEETEELK(gl)R_ |
| XRCC6 | Ubiquitylation | K451 | -1.713 | -1.901 | _MPFTEK(gl)IMATPEQVGK_ |
| XRCC6 | Phosphorylation | T455 | -0.085 | 0.348 | _IMAT(ph)PEQVGK_ |
| XRCC6 | Ubiquitylation | K461 | 0.239 | -0.409 | _IMATPEQVGK(gl)MK_ |
| XRCC6 | Ubiquitylation | K463 | -0.609 | -0.641 | _MK(gl)AIVEK_ |
| XRCC6 | Ubiquitylation | K468 | -1.302 | -0.451 | _AIVEK(gl)LR_ |
| XRCC6 | Phosphorylation | S475 | 1.136 | 0.167 | _S(ph)DSFENPVLQQHFR_ |
| XRCC6 | Phosphorylation | S477 | 1.023 | 0.034 | _SDS(ph)FENPVLQQHFR_ |
| XRCC6 | Ubiquitylation | K516 | -1.089 | _VEAMNK(gl)R_ | |
| XRCC6 | Phosphorylation | S560 | 0.318 | 0.378 | _VEYS(ph)EEELKTHISK_ |
| XRCC6 | Ubiquitylation | K565 | 0.021 | -0.887 | _VEYSEEELK(gl)THISK_ |
| XRCC6 | Ubiquitylation | K575 | 0.031 | -0.121 | _GTLGK(gl)FTVPMLK_ |
| XRCC6 | Ubiquitylation | K591 | 0.474 | 0.187 | _AYGLK(gl)SGLK_ |
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