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Query: SNRPC

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SNRPC 0 0.448 -0.200 0.800 -0.392 0.470 0.128 -0.891

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SNRPC Phosphorylation S19 0.125 _FYCDYCDTYLTHDSPS(ph)VRK_
SNRPC Phosphorylation S17 -0.713 0.002 _FYCDYCDTYLTHDS(ph)PSVR_
SNRPC Ubiquitylation K3 -0.162 _PK(gl)FYCDYCDTYLTHDSPSVR_
SNRPC Ubiquitylation K35 0.999 _ENVK(gl)DYYQK_

Background Information for SNRPC:


Pubmed-SNRPC »
Uniprot-SNRPC »
Biogrid-SNRPC »
ProteomicsDB-SNRPC »

Tumorportal-SNRPC »
COSMIC-SNRPC »
GenomeRNAi-SNRPC »
Genecards-SNRPC


Protein-protein Interactions for SNRPC
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SNRNP70 Cat. description Hein, Mann, Cell 2015
Category members IP bait SNRNP70 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPF Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPG Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRPN Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SNRPC
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_C2H2_matrin IPR000690 0
Category members Znf_U1 IPR003604 0
Category members Znf_U1-C IPR013085 0


Protein complexes (CORUM database) featuring SNRPC
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 351 Spliceosome Database 9.3


Categories featuring SNRPC
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members Pathway Pathway_851 KEGG_SPLICEOSOME 0 7.94
Category members GO Category GO:0000398 mRNA splicing, via spliceosome Database 7.06
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0003729 mRNA binding Database 1.38
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0005685 U1 snRNP Database 0.77
Category members GO Category GO:0000395 mRNA 5'-splice site recognition Database 0.43
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0000387 spliceosomal snRNP assembly Database 0.04
Category members GO Category GO:0015030 Cajal body Database 0.04
Category members GO Category GO:0003727 single-stranded RNA binding Database 0
Category members GO Category GO:0042803 protein homodimerization activity Database 0


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