bioLOGIC-db

bioLOGIC Data

Query: SNRPA1

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
SNRPA1	1	3.246	-1.610	3.360	-0.071	-0.629	0.211	-0.681	-0.320

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
SNRPA1	Ubiquitylation	K221	0.206	0.311	_LK(gl)GLLQSGQIPGR_
SNRPA1	Ubiquitylation	K172	0.514	0.038	_GAQLAK(gl)DIAR_
SNRPA1	Phosphorylation	S197		-0.078	_GGPS(ph)PGDVEAIK_
SNRPA1	Phosphorylation	T180		-0.576	_SKT(ph)FNPGAGLPTDKK_
SNRPA1	Ubiquitylation	K67		-1.041	_LK(gl)TLLVNNNR_
SNRPA1	Ubiquitylation	K149	-0.174	-1.201	_VLDFQK(gl)VK_
SNRPA1	Ubiquitylation	K160	0.416		_QEAEK(gl)MFK_
SNRPA1	Ubiquitylation	K179	-0.103		_SK(gl)TFNPGAGLPTDKK_
SNRPA1	Ubiquitylation	K191	-0.454		_TFNPGAGLPTDK(gl)K_
SNRPA1	Ubiquitylation	K192	-0.058		_TFNPGAGLPTDKK(gl)_

ProteomicsDB-SNRPA1 »

Protein-protein Interactions for SNRPA1

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait ING3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait JUNB	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait KCNK1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SNRPA1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPE	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPF	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPG	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPN	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SYF2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in SNRPA1

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	U2A'_phosphoprotein32A_C	IPR003603	0.18

Protein complexes (CORUM database) featuring SNRPA1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	351	Spliceosome	Database	9.3
Category members	Corum	1181	C complex spliceosome	Database	2.39
Category members	Corum	1183	CDC5L complex	Database	2.07
Category members	Corum	2755	17S U2 snRNP	Database	1.77
Category members	Corum	1261	SRm160/300 complex	Database	0.02

Categories featuring SNRPA1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0003723	RNA binding	Database	INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	Pathway	Pathway_373	REACTOME_MRNA_PROCESSING	0	12.92
Category members	Pathway	Pathway_380	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	0	12.24
Category members	GO Category	GO:0008380	RNA splicing	Database	10.77
Category members	GO Category	GO:0030529	ribonucleoprotein complex	Database	8.45
Category members	Pathway	Pathway_851	KEGG_SPLICEOSOME	0	7.94
Category members	GO Category	GO:0000398	mRNA splicing, via spliceosome	Database	7.06
Category members	Pathway	Pathway_377	REACTOME_MRNA_SPLICING	0	6.99
Category members	GO Category	GO:0005681	spliceosomal complex	Database	3.88
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0071013	catalytic step 2 spliceosome	Database	2.28
Category members	GO Category	GO:0005686	U2 snRNP	Database	0.74
Category members	GO Category	GO:0019013	viral nucleocapsid	Database	0.55
Category members	GO Category	GO:0030532	small nuclear ribonucleoprotein complex	Database	0.15