bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: SCAF11

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SCAF11 2 10.111 0.150 -0.090 1.759 0.952 1.247 0.376 0.468

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SCAF11 Phosphorylation S802 0.689 _FHS(ph)PSTTWS(ph)PNKDTPQEK_
SCAF11 Phosphorylation S613 0.576 0.654 _TEELIESPKLES(ph)SEGEIIQTVDR_
SCAF11 Phosphorylation S614 0.665 0.542 _LESS(ph)EGEIIQTVDR_
SCAF11 Phosphorylation S608 0.626 0.504 _TEELIES(ph)PKLESSEGEIIQTVDR_
SCAF11 Phosphorylation T602 0.547 0.450 _T(ph)EELIESPKLESSEGEIIQTVDR_
SCAF11 Phosphorylation S1170 0.345 _NSS(ph)GPQSGWMK_
SCAF11 Phosphorylation S405 0.301 0.301 _SSSNDS(ph)VDEETAESDTSPVLEK_
SCAF11 Ubiquitylation K146 0.229 _EDLLSAK(gl)VCDLK_
SCAF11 Phosphorylation S796 0.171 _FHS(ph)PSTTWSPNK_
SCAF11 Phosphorylation S402 0.253 0.097 _SSS(ph)NDSVDEETAESDTSPVLEK_
SCAF11 Phosphorylation S963 -0.389 -0.222 _IDRDSYS(ph)PR_
SCAF11 Ubiquitylation K120 -0.349 _NENSFEK(gl)QVSCHENSK_
SCAF11 Ubiquitylation K166 -0.834 _NSLYSETGGK(gl)K_
SCAF11 Phosphorylation S338 -0.660 -0.850 _S(ph)PISDNSGCDAPGNSNPSLSVPSSAESEK_
SCAF11 Ubiquitylation K165 -0.943 _NSLYSETGGK(gl)K_
SCAF11 Ubiquitylation K171 -1.977 -1.385 _NAAIK(gl)INKPQR_
SCAF11 Ubiquitylation K299 -2.071 _GYALAHTQEGEEKK(gl)_
SCAF11 Ubiquitylation K151 -2.294 _VCDLK(gl)WIHR_
SCAF11 Phosphorylation S533 4.391 _QDQISGLS(ph)QSEVK_
SCAF11 Ubiquitylation K676 -0.703 _NNLLNTK(gl)LEK_

Background Information for SCAF11:





Protein-protein Interactions for SCAF11

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SCAF11 Cat. description Hein, Mann, Cell 2015
Category members IP bait APBA3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait JMJD6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LUC7L2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PRMT8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRNP70 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRPC4AP Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait U2AF1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait U2AF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SCAF11

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_RING IPR001841 0
Category members Znf_C3HC4_RING-type IPR018957 0


Protein complexes (CORUM database) featuring SCAF11

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SCAF11

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members GO Category GO:0006397 mRNA processing Database 3.76
Category members GO Category GO:0000375 RNA splicing, via transesterification reactions Database 0.73
Category members GO Category GO:0000245 spliceosomal complex assembly Database 0.39
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0046872 metal ion binding Database 0


© Copyright Svejstrup Laboratory 2015