bioLOGIC-db

bioLOGIC Data

Query: PFDN5

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
PFDN5	0	1.012	0.900	-0.490

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
PFDN5	Ubiquitylation	K153	-0.155	0.828	_IQQLTALGAAQATAK(gl)A_
PFDN5	Ubiquitylation	K42		0.746	_VVQTK(gl)YVEAK_
PFDN5	Ubiquitylation	K104	0.185	0.595	_TAEDAKDFFK(gl)R_
PFDN5	Ubiquitylation	K55	0.014	0.436	_DCLNVLNK(gl)SNEGK_
PFDN5	Ubiquitylation	K112	-0.336		_KIDFLTK(gl)QMEK_

ProteomicsDB-PFDN5 »

Protein-protein Interactions for PFDN5

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait GSPT1;GSPT2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait MAX	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PFDN2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait VBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait DDB2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GNB2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait KLHDC2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PFDN2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PFDN4	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait VBP1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in PFDN5

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	Prefoldin_subunit_alpha	IPR004127	0
Category members	Prefoldin	IPR009053	0

Protein complexes (CORUM database) featuring PFDN5

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	112	Prefoldin complex	Database	0.27
Category members	Corum	33	Prefoldin	Database	0.27

Categories featuring PFDN5

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	Pathway	Pathway_11	REACTOME_METABOLISM_OF_PROTEINS	0	12.01
Category members	GO Category	GO:0044267	cellular protein metabolic process	Database	10.42
Category members	GO Category	GO:0006457	protein folding	Database	4.93
Category members	GO Category	GO:0051082	unfolded protein binding	Database	3.74
Category members	GO Category	GO:0045892	negative regulation of transcription, DNA-dependent	Database	1.15
Category members	Pathway	Pathway_742	REACTOME_PROTEIN_FOLDING	0	0.9
Category members	GO Category	GO:0051084	'de novo' posttranslational protein folding	Database	0.63
Category members	Pathway	Pathway_1288	REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC	0	0.4
Category members	GO Category	GO:0016272	prefoldin complex	Database	0.15
Category members	Pathway	Pathway_200	PID_P73PATHWAY	0	0.11
Category members	GO Category	GO:0003714	transcription corepressor activity	Database	0
Category members	GO Category	GO:0006355	regulation of transcription, DNA-dependent	Database	0
Category members	GO Category	GO:0060041	retina development in camera-type eye	Database	0