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Query: CD47

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
CD47 0 1.897 0.860 -0.750 0.968 0.864

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
CD47 Ubiquitylation K317 0.065 _AVEEPLNAFKESK(gl)_

Background Information for CD47:


Pubmed-CD47 »
Uniprot-CD47 »
Biogrid-CD47 »
ProteomicsDB-CD47 »

Tumorportal-CD47 »
COSMIC-CD47 »
GenomeRNAi-CD47 »
Genecards-CD47


Protein-protein Interactions for CD47
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BSCL2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM134C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IPPK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait KLRG2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS9C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LILRB4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait S1PR1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SLC1A5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TM4SF18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMEM128 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TSPAN5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WASF3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in CD47
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Ig-like_dom IPR007110 0.6
Category members CD47_Vset IPR013270 0


Protein complexes (CORUM database) featuring CD47
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 2429 ITGA2-ITGB1-CD47 complex Database 0.29
Category members Corum 2423 ITGA4-ITGB1-CD47 complex Database 0.25
Category members Corum 2355 ITGAV-ITGB3-CD47-FCER2 complex Database 0
Category members Corum 2356 ITGB3-ITGAV-CD47 complex Database 0
Category members Corum 2377 ITGA2b-ITGB3-CD47-SRC complex Database 0
Category members Corum 2872 ITGA2b-ITGB3-CD9-GP1b-CD47 complex Database 0
Category members Corum 2896 ITGA2b-ITGB3-CD47-FAK complex Database 0


Categories featuring CD47
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0005887 integral to plasma membrane Database 1.69
Category members GO Category GO:0070062 extracellular vesicular exosome Database 1.36
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members Pathway Pathway_53 REACTOME_HEMOSTASIS 0 0.4
Category members GO Category GO:0007596 blood coagulation Database 0.4
Category members Pathway Pathway_560 REACTOME_CELL_CELL_COMMUNICATION 0 0.25
Category members GO Category GO:0050870 positive regulation of T cell activation Database 0.13
Category members GO Category GO:0050729 positive regulation of inflammatory response Database 0.08
Category members Pathway Pathway_600 REACTOME_CELL_SURFACE_INTERACTIONS_AT_THE_VASCULAR_WALL 0 0.05
Category members GO Category GO:0050900 leukocyte migration Database 0.04
Category members Pathway Pathway_1110 REACTOME_SIGNAL_REGULATORY_PROTEIN_SIRP_FAMILY_INTERACTIONS 0 0
Category members Pathway Pathway_740 PID_INTEGRIN3_PATHWAY 0 0
Category members Pathway Pathway_922 KEGG_ECM_RECEPTOR_INTERACTION 0 0
Category members GO Category GO:0007155 cell adhesion Database 0
Category members GO Category GO:0007229 integrin-mediated signaling pathway Database 0
Category members GO Category GO:0008228 opsonization Database 0
Category members GO Category GO:0008284 positive regulation of cell proliferation Database 0
Category members GO Category GO:0009617 response to bacterium Database 0
Category members GO Category GO:0022409 positive regulation of cell-cell adhesion Database 0
Category members GO Category GO:0050766 positive regulation of phagocytosis Database 0
Category members GO Category GO:0070053 thrombospondin receptor activity Database 0


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