bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: ARID4B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
ARID4B 1 2.720 -0.520 0.690 0.971 -0.275 0.174 -0.031 -0.144

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
ARID4B Phosphorylation S1153 1.670 _GTNSS(ph)DSEELSAGESITK_
ARID4B Phosphorylation S790 0.615 _DIEVLS(ph)EDTDYEEDEVTK_
ARID4B Phosphorylation S675 -0.335 -0.381 _LSKPPFQTNPS(ph)PEMVSK_

Background Information for ARID4B:


Pubmed-ARID4B »
Uniprot-ARID4B »
Biogrid-ARID4B »
ProteomicsDB-ARID4B »

Tumorportal-ARID4B »
COSMIC-ARID4B »
GenomeRNAi-ARID4B »
Genecards-ARID4B


Protein-protein Interactions for ARID4B
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait FAM60A Cat. description Hein, Mann, Cell 2015
Category members IP bait HDAC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait KIF11 Cat. description Hein, Mann, Cell 2015
Category members IP bait MAX Cat. description Hein, Mann, Cell 2015
Category members IP bait PAFAH1B1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SAP30 Cat. description Hein, Mann, Cell 2015
Category members IP bait C13orf31 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CASP1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CTSK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM60A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HDAC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ING2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MXD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MXD3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PHF23 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RBBP7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait YAF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF704 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in ARID4B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Chromodomain-like IPR016197 2.29
Category members Tudor IPR002999 0.28
Category members RBB1NT IPR012603 0.22
Category members Tudor-knot IPR025995 0.01
Category members ARID/BRIGHT_DNA-bd IPR001606 0


Protein complexes (CORUM database) featuring ARID4B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 739 SIN3-ING1b complex II Database 4.24
Category members Corum 691 SIN3-SAP25 complex Database 1.77
Category members Corum 743 SIN3-SAP25 complex Database 1.77
Category members Corum 591 SAP complex (Sin3-associated protein complex) Database 1.75
Category members Corum 738 SIN3-ING1b complex I Database 1.47
Category members Corum 596 SIN3-HDAC-SAP30-ARID4 complex Database 1.42
Category members Corum 695 SIN3-HDAC-SAP30-ARID4 complex Database 1.42
Category members Corum 698 SIN3-HDAC-SAP30-ARID4 complex Database 1.42
Category members Corum 592 SAP complex (Sin3-associated protein complex) Database 1.33
Category members Corum 697 BRMS1-RBP1 complex Database 0


Categories featuring ARID4B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0006349 regulation of gene expression by genetic imprinting Database 1.64
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0036124 histone H3-K9 trimethylation Database 0.22
Category members GO Category GO:0003674 molecular_function Database 0.08
Category members GO Category GO:0005575 cellular_component Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0008150 biological_process Database 0
Category members GO Category GO:0034773 histone H4-K20 trimethylation Database 0


.

© Copyright Svejstrup Laboratory 2015