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Query: ARID1B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
ARID1B 0 -0.132 1.330 -0.340 0.410 -0.553 0.164 0.200

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
ARID1B Phosphorylation S1555 -0.906 _MS(ph)PSKSPFLPSMK_

Background Information for ARID1B:


Pubmed-ARID1B »
Uniprot-ARID1B »
Biogrid-ARID1B »
ProteomicsDB-ARID1B »

Tumorportal-ARID1B »
COSMIC-ARID1B »
GenomeRNAi-ARID1B »
Genecards-ARID1B


Protein-protein Interactions for ARID1B
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BCL7C Cat. description Hein, Mann, Cell 2015
Category members IP bait BCL7A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait BCL7C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NAGK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait QPRT Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCC2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCE1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SS18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in ARID1B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ARM-type_fold IPR016024 9.26
Category members DUF3518 IPR021906 0.04
Category members ARID/BRIGHT_DNA-bd IPR001606 0


Protein complexes (CORUM database) featuring ARID1B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 1239 EBAFb complex Database 1.57
Category members Corum 238 SWI-SNF chromatin remodeling-related-BRCA1 complex Database 1.57
Category members Corum 189 BAF complex Database 1.36
Category members Corum 2829 RSmad complex Database 0.06


Categories featuring ARID1B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0003713 transcription coactivator activity Database 3.68
Category members GO Category GO:0016514 SWI/SNF complex Database 2.12
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members Human mutations pubmedid:24460190 The molecular pathology of melanoma: an integrated taxonomy of melanocytic neoplasia (Bastian, 2014). Research article 0.88
Category members GO Category GO:0048096 chromatin-mediated maintenance of transcription Database 0.6
Category members Disease phenotype COFFIN-SIRIS_SYNDROME COFFIN-SIRIS SYNDROME Database 0.53
Category members GO Category GO:0043231 intracellular membrane-bounded organelle Database 0.43
Category members GO Category GO:0005622 intracellular Database 0.32
Category members Disease phenotype intellectual_disability_-_sparse_hair_-_brachydactyly intellectual disability - sparse hair - brachydactyly Database 0.04
Category members GO Category GO:0007399 nervous system development Database 0


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