RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FANCD2	5	-0.650	0.520	1.226	0.362	-0.007	1.535	0.808
RPS27A	4	-1.330	2.560	-0.309	0.131	-0.009
UBA52	3	-1.260	2.180	-0.309	0.131	-0.009
UBA52	3	-1.260	2.180
USP1	1	2.430	-1.190
ATR	1	-1.040	0.920	0.671			1.041	0.708
ATM	0						0.398	0.474

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATM	Ubiquitylation	K307		-0.196	_GAYESTK(gl)WR_
ATM	Ubiquitylation	K331		-0.126	_GK(gl)YSSGFR_
ATM	Ubiquitylation	K385		-0.669	_ESSDYSVPCK(gl)R_
ATM	Ubiquitylation	K1101		-0.548	_LFQDTK(gl)GDSSR_
ATM	Ubiquitylation	K1109		-1.666	_LLK(gl)ALPLK_
ATM	Ubiquitylation	K1698		-1.026	_DASYTK(gl)ALK_
ATM	Ubiquitylation	K1738		-0.137	_SAAVTCLK(gl)NILATK_
ATM	Ubiquitylation	K2025		-1.497	_SIGEPDSLYGCGGGK(gl)MLQPITR_
ATR	Ubiquitylation	K32		-0.929	_ELGSATPEEYNTVVQK(gl)PR_
ATR	Phosphorylation	S435	0.516	0.284	_RLS(ph)SSLNPSK_
ATR	Ubiquitylation	K746		-1.823	_NLK(gl)ATSQHECSSSQLK_
ATR	Ubiquitylation	K1019	1.662		_TLGK(gl)QLNVNRR_
ATR	Ubiquitylation	K1600	-0.437		_FQALK(gl)AEK_
ATR	Ubiquitylation	K2106		-0.136	_AYEWEK(gl)AGR_
ATR	Ubiquitylation	K2604	0.657	1.118	_LQGVIK(gl)TR_
FANCD2	Ubiquitylation	K77		-0.288	_TGESQNQLAVDQIAFQK(gl)K_
FANCD2	Ubiquitylation	K137		0.364	_LQDEEASMGASYSKSLIK(gl)_
FANCD2	Ubiquitylation	K322		-0.535	_LQASQVK(gl)LK_
FANCD2	Ubiquitylation	K324		-0.384	_LQASQVKLK(gl)_
FANCD2	Ubiquitylation	K561	2.102	3.950	_K(gl)QLSSTVFKYK_
FANCD2	Phosphorylation	S592	1.311	1.350	_SES(ph)PSLTQER_
FANCD2	Phosphorylation	S717	2.435	3.130	_DGGPVTS(ph)QESGQK_
FANCD2	Phosphorylation	S1401		-0.015	_S(ph)QNSQESTADESEDDMSSQASK_
FANCD2	Phosphorylation	S1404		-0.348	_S(ph)QNSQESTADESEDDMSSQASK_
FANCD2	Phosphorylation	S1412	-1.471		_SQNSQESTADES(ph)EDDM(ox)SSQASK_
RPS27A	Ubiquitylation	K6	1.066	0.995	_MQIFVK(gl)TLTGK_
RPS27A	Ubiquitylation	K11	-0.488	-0.081	_TLTGK(gl)TITLEVEPSDTIENVKAK(gl)_
RPS27A	Ubiquitylation	K27	-0.882	-0.159	_TLTGK(gl)TITLEVEPSDTIENVK(gl)AK_
RPS27A	Ubiquitylation	K29	-1.087	-1.029	_AK(gl)IQDK(gl)EGIPPDQQR_
RPS27A	Ubiquitylation	K33	-0.736	-0.407	_IQDK(gl)EGIPPDQQR_
RPS27A	Ubiquitylation	K48	-0.062	0.315	_LIFAGK(gl)QLEDGRTLSDYNIQK_
RPS27A	Phosphorylation	S57	1.909	0.548	_TLS(ph)DYNIQK_
RPS27A	Ubiquitylation	K63	0.276	0.299	_TLSDYNIQK(gl)ESTLHLVLR_
RPS27A	Ubiquitylation	K99	0.109	2.111	_VK(gl)LAVLK_
RPS27A	Ubiquitylation	K104	0.674	2.102	_LAVLK(gl)YYK_
RPS27A	Ubiquitylation	K107	2.949	3.611	_YYK(gl)VDENGK(gl)ISR_
RPS27A	Ubiquitylation	K113	1.572	3.672	_YYK(gl)VDENGK(gl)ISR_
RPS27A	Ubiquitylation	K152	4.747	4.970	_CCLTYCFNK(gl)PEDK_
RPS27A	Ubiquitylation	K156	4.809		_CCLTYCFNKPEDK(gl)_
UBA52	Ubiquitylation	K6	1.066	0.995	_MQIFVK(gl)TLTGK_
UBA52	Ubiquitylation	K11	-0.488	-0.081	_TLTGK(gl)TITLEVEPSDTIENVKAK(gl)_
UBA52	Ubiquitylation	K27	-0.882	-0.159	_TLTGK(gl)TITLEVEPSDTIENVK(gl)AK_
UBA52	Ubiquitylation	K29	-1.087	-1.029	_AK(gl)IQDK(gl)EGIPPDQQR_
UBA52	Ubiquitylation	K33	-0.736	-0.407	_IQDK(gl)EGIPPDQQR_
UBA52	Ubiquitylation	K48	-0.062	0.315	_LIFAGK(gl)QLEDGRTLSDYNIQK_
UBA52	Phosphorylation	S57	1.909	0.548	_TLS(ph)DYNIQK_
UBA52	Ubiquitylation	K63	0.276	0.299	_TLSDYNIQK(gl)ESTLHLVLR_
UBA52	Ubiquitylation	K93	0.181	2.418	_YNCDK(gl)MICR_
UBA52	Ubiquitylation	K99	0.109	2.111	_VK(gl)LAVLK_
UBA52	Ubiquitylation	K104	0.674	2.102	_LAVLK(gl)YYK_
UBA52	Ubiquitylation	K107	2.949	3.611	_YYK(gl)VDENGK(gl)ISR_
UBA52	Ubiquitylation	K113	1.572	3.672	_YYK(gl)VDENGK(gl)ISR_
UBA52	Ubiquitylation	K152	4.747	4.970	_CCLTYCFNK(gl)PEDK_
UBA52	Ubiquitylation	K156	4.809		_CCLTYCFNKPEDK(gl)_
USP1	Phosphorylation	S42	1.055		_ALDFTDS(ph)QENEEK_
USP1	Phosphorylation	S66		0.045	_ASEIDQVVPAAQS(ph)SPINCEK_
USP1	Phosphorylation	S67	-0.170	0.304	_ASEIDQVVPAAQSS(ph)PINCEK_
USP1	Phosphorylation	S475	-1.080	-0.086	_REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK_
USP1	Ubiquitylation	K689	0.173	-1.509	_ASNPDK(gl)VASTAFAENR_