RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATP5B	1	2.320	-1.410	0.568	0.424	-1.201
NNT	1	-1.550	3.290				0.491	0.403
ATP6V1B2	1	-1.700	3.610				-0.526	0.143
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
ATP6V1D	0	1.770	-0.910				0.833	0.523
ATP6V1A	0	-0.790	0.280	0.981			0.151	0.014
ATP6V1B1	0	1.440	-1.080				-0.526	0.143
ATP6V1E1	0	-0.180	0.310				-0.346	-2.246
ATP6V1G1	0	0.090	-0.400
ATP6V1G1	0	0.090	-0.400
ATP6V1G2	0	-0.040	0.160
ATP6V1G2	0	-0.040	0.160
ATP6V1G2-D	0
ATP6V1G2-D	0
ATP5A1	0	-0.100	0.190	0.149	0.419	-0.743
ATP6V1C1	0
ATP5J2	0	-0.450	0.140	0.429	-0.169	-0.273	-0.094	-0.322
ATP5J2	0	-0.450	0.140				-0.905
ATP5O	0	0.140	-0.360	-0.208			0.202	0.472

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP5A1	Ubiquitylation	K161		-1.608	_VVDALGNAIDGK(gl)GPIGSK_
ATP5A1	Ubiquitylation	K175		-0.184	_VGLK(gl)APGIIPR_
ATP5A1	Ubiquitylation	K261		-0.997	_STVAQLVK(gl)R_
ATP5B	Ubiquitylation	K55		-1.344	_DYAAQTSPSPK(gl)AGAATGR_
ATP5B	Ubiquitylation	K426		-0.601	_GVQK(gl)ILQDYK_
ATP5B	Phosphorylation	S465		-1.223	_FLS(ph)QPFQVAEVFTGHMGK_
ATP5O	Ubiquitylation	K84	-1.113	1.074	_VAASVLNPYVK(gl)R_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
ATP6V1A	Ubiquitylation	K5	-0.075	-0.921	_(ac)MDFSK(gl)LPK_
ATP6V1A	Ubiquitylation	K132		0.567	_DIK(gl)WDFTPCK_
ATP6V1A	Ubiquitylation	K139	-1.426	-0.412	_WDFTPCK(gl)NLR_
ATP6V1A	Ubiquitylation	K393		-0.894	_VK(gl)CLGNPER_
ATP6V1A	Ubiquitylation	K516		-0.571	_LIK(gl)DDFLQQNGYTPYDR_
ATP6V1C1	Ubiquitylation	K28	-0.393		_LHAATSK(gl)NNNLAVTSK_
ATP6V1E1	Ubiquitylation	K10	0.069	-0.101	_(ac)ALSDADVQK(gl)QIK_
ATP6V1E1	Ubiquitylation	K145	-2.187	-0.725	_KQDFPLVK(gl)AAVQK_
ATP6V1E1	Ubiquitylation	K150		-0.749	_AAVQK(gl)AIPMYK_
ATP6V1E1	Ubiquitylation	K156		-1.382	_AIPMYK(gl)IATK_
ATP6V1G1	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G1	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2-DDX39B	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2-DDX39B	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_