bioLOGIC Category
Results for the Category
base-excision repair, DNA ligation
(GO:0006288)
| RNAi screen result
|
RNAPII IP (MG132) |
CSB IP |
CSB IP (MG132) |
Chrom. |
Chrom. (MG132) |
Ubi /Phospo |
Ubi /Phospho (MG132) |
| W |
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| Gene name |
MGoogle Score |
RNAi high |
RNAi low |
RNAPII-IP (MG132) |
CSB-IP |
CSB-IP (MG132) |
Chrom. |
Chrom. (MG132) |
|
HMGB1
|
2
|
-1.590
|
3.400
|
|
2.856
|
-1.899
|
0.030
|
-0.792
|
|
LIG3
|
1
|
-0.380
|
2.090
|
|
-0.284
|
0.336
|
0.549
|
0.370
|
|
HMGB2
|
0
|
-0.350
|
0.170
|
|
|
-1.810
|
0.655
|
0.285
|
| Gene name |
PTM type |
PTM site |
UV |
UV (MG132) |
Sequence |
|
HMGB1
|
Ubiquitylation
|
K50
|
0.651
|
|
_WK(gl)TMSAK_
|
|
HMGB1
|
Ubiquitylation
|
K59
|
1.001
|
0.009
|
_GK(gl)FEDMAK_
|
|
HMGB1
|
Ubiquitylation
|
K114
|
|
0.314
|
_IK(gl)GEHPGLSIGDVAK_
|
|
HMGB1
|
Ubiquitylation
|
K127
|
0.018
|
|
_IKGEHPGLSIGDVAK(gl)K_
|
|
HMGB1
|
Ubiquitylation
|
K128
|
-0.407
|
|
_K(gl)LGEMWNNTAADDKQPYEK_
|
|
HMGB1
|
Ubiquitylation
|
K157
|
0.850
|
|
_YEK(gl)DIAAYR_
|
|
HMGB2
|
Ubiquitylation
|
K114
|
0.323
|
|
_IK(gl)SEHPGLSIGDTAK_
|
|
HMGB2
|
Ubiquitylation
|
K128
|
0.363
|
|
_K(gl)LGEMWSEQSAK_
|
|
HMGB2
|
Ubiquitylation
|
K147
|
0.205
|
-0.408
|
_DKQPYEQK(gl)AAK_
|
|
HMGB2
|
Ubiquitylation
|
K150
|
-0.251
|
|
_DKQPYEQKAAK(gl)_
|
|
LIG3
|
Phosphorylation
|
T209
|
-0.306
|
-0.552
|
_LTTTGQVT(ph)SPVK_
|
|
LIG3
|
Phosphorylation
|
S210
|
-0.163
|
0.011
|
_LTTTGQVTS(ph)PVK_
|
|
LIG3
|
Phosphorylation
|
S241
|
-0.868
|
-0.902
|
_PNNSGEAPS(ph)SPTPK_
|
|
LIG3
|
Phosphorylation
|
S242
|
-0.782
|
-0.612
|
_FSGFSAKPNNSGEAPSS(ph)PTPK_
|
|
LIG3
|
Ubiquitylation
|
K728
|
0.493
|
0.853
|
_WCTVTK(gl)CAGGHDDATLAR_
|
|
LIG3
|
Ubiquitylation
|
K833
|
1.857
|
0.467
|
_ELYQLSK(gl)EK_
|
© Copyright Svejstrup Laboratory 2015