bioLOGIC Category
Results for the Category
Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A)
(1059)
| RNAi screen result
|
RNAPII IP (MG132) |
CSB IP |
CSB IP (MG132) |
Chrom. |
Chrom. (MG132) |
Ubi /Phospo |
Ubi /Phospho (MG132) |
| W |
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| Gene name |
MGoogle Score |
RNAi high |
RNAi low |
RNAPII-IP (MG132) |
CSB-IP |
CSB-IP (MG132) |
Chrom. |
Chrom. (MG132) |
|
SNX1
|
0
|
-0.090
|
-0.590
|
|
|
|
|
|
|
VPS35
|
0
|
-0.480
|
0.040
|
|
|
|
|
|
|
VPS35
|
0
|
-0.480
|
0.040
|
-0.214
|
0.370
|
-0.544
|
0.601
|
0.416
|
|
VPS26A
|
0
|
-0.050
|
0.000
|
-0.098
|
|
|
0.542
|
|
|
SNX2
|
0
|
-0.850
|
-0.050
|
|
|
|
-0.347
|
0.878
|
| Gene name |
PTM type |
PTM site |
UV |
UV (MG132) |
Sequence |
|
SNX1
|
Ubiquitylation
|
K179
|
1.013
|
0.331
|
_SK(gl)QFAVK_
|
|
SNX1
|
Ubiquitylation
|
K223
|
-0.206
|
|
_SLIGMTKVK(gl)_
|
|
SNX2
|
Ubiquitylation
|
K116
|
0.089
|
0.156
|
_IESK(gl)SMSAPVIFDR_
|
|
SNX2
|
Phosphorylation
|
S119
|
|
0.336
|
_SMS(ph)APVIFDR_
|
|
SNX2
|
Ubiquitylation
|
K181
|
0.631
|
1.039
|
_SEFSVK(gl)R_
|
|
SNX2
|
Ubiquitylation
|
K218
|
|
-0.014
|
_SIVGMTK(gl)VK_
|
|
SNX2
|
Ubiquitylation
|
K220
|
-0.305
|
|
_VK(gl)VGKEDSSSTEFVEK_
|
|
SNX2
|
Ubiquitylation
|
K294
|
-0.176
|
|
_AADAVNK(gl)MTIK_
|
|
VPS26A
|
Ubiquitylation
|
K57
|
-0.401
|
|
_VNLAFK(gl)QPGKR_
|
|
VPS26A
|
Ubiquitylation
|
K242
|
-0.544
|
|
_YEIMDGAPVK(gl)GESIPIR_
|
|
VPS35
|
Phosphorylation
|
T4
|
-0.120
|
|
_PTT(ph)QQSPQDEQEKLLDEAIQAVK_
|
|
VPS35
|
Phosphorylation
|
S7
|
|
0.322
|
_PTTQQS(ph)PQDEQEKLLDEAIQAVK_
|
|
VPS35
|
Ubiquitylation
|
K659
|
|
-0.478
|
_TQCALAASK(gl)LLK_
|
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