bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: VPS37C

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
VPS37C 0 0.354 0.110 -0.130

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
VPS37C Ubiquitylation K5 0.354 _(ac)METLK(gl)DK_

Background Information for VPS37C:


Pubmed-VPS37C »
Uniprot-VPS37C »
Biogrid-VPS37C »
ProteomicsDB-VPS37C »

Tumorportal-VPS37C »
COSMIC-VPS37C »
GenomeRNAi-VPS37C »
Genecards-VPS37C


Protein-protein Interactions for VPS37C
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CD2AP Cat. description Hein, Mann, Cell 2015
Category members IP bait SPAST Cat. description Hein, Mann, Cell 2015
Category members IP bait TSG101 Cat. description Hein, Mann, Cell 2015
Category members IP bait VPS28 Cat. description Hein, Mann, Cell 2015
Category members IP bait HOXB5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in VPS37C
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Mod_r IPR009851 0.05


Protein complexes (CORUM database) featuring VPS37C
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 1192 ESCRT-I complex Database 0


Categories featuring VPS37C
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0016032 viral process Database INF
Category members Pathway Pathway_197 REACTOME_HIV_INFECTION 0 12.07
Category members Pathway Pathway_376 REACTOME_HIV_LIFE_CYCLE 0 9.45
Category members Pathway Pathway_374 REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 0 7.57
Category members GO Category GO:0015031 protein transport Database 3.48
Category members Pathway Pathway_666 KEGG_ENDOCYTOSIS 0 1.25
Category members Pathway Pathway_474 REACTOME_MEMBRANE_TRAFFICKING 0 1.14
Category members GO Category GO:0043231 intracellular membrane-bounded organelle Database 0.43
Category members GO Category GO:0016197 endosomal transport Database 0.43
Category members Pathway Pathway_800 REACTOME_ENDOSOMAL_SORTING_COMPLEX_REQUIRED_FOR_TRANSPORT_ESCRT 0 0.06
Category members GO Category GO:0000813 ESCRT I complex Database 0.04
Category members Pathway Pathway_833 REACTOME_MEMBRANE_BINDING_AND_TARGETTING_OF_GAG_PROTEINS 0 0
Category members GO Category GO:0010008 endosome membrane Database 0
Category members GO Category GO:0019068 virion assembly Database 0
Category members GO Category GO:0019082 viral protein processing Database 0
Category members GO Category GO:0031902 late endosome membrane Database 0


.

© Copyright Svejstrup Laboratory 2015