bioLOGIC-db

bioLOGIC Data

Query: SNRNP40

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
SNRNP40	0	-2.925	0.200	0.070
SNRNP40	0	-2.925	0.200	0.070	-1.088	-0.555	-0.079	-1.145	-0.242

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
SNRNP40	Ubiquitylation	K18	-0.028		_KGPELPLVPVK(gl)R_
SNRNP40	Ubiquitylation	K270	0.184		_VWDVRPFAPK(gl)ER_

ProteomicsDB-SNRNP40 »

Protein-protein Interactions for SNRNP40

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait BCAS2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PQBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SART1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SNW1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait YWHAZ	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CD2BP2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait DDX23	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PPIE	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PRPF3	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RSRC1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRNP27	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRNP40	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPE	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPF	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait TSSC4	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in SNRNP40

Protein complexes (CORUM database) featuring SNRNP40

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	351	Spliceosome	Database	9.3
Category members	Corum	1181	C complex spliceosome	Database	2.39

Categories featuring SNRNP40

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	DDR Literature	pubmedid:24332808	Marechal et al., 2014 RPA-mediated recruitment		INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	Pathway	Pathway_373	REACTOME_MRNA_PROCESSING	0	12.92
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	Pathway	Pathway_380	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	0	12.24
Category members	GO Category	GO:0008380	RNA splicing	Database	10.77
Category members	Pathway	Pathway_851	KEGG_SPLICEOSOME	0	7.94
Category members	GO Category	GO:0000398	mRNA splicing, via spliceosome	Database	7.06
Category members	Pathway	Pathway_377	REACTOME_MRNA_SPLICING	0	6.99
Category members	GO Category	GO:0071013	catalytic step 2 spliceosome	Database	2.28
Category members	Pathway	Pathway_372	REACTOME_MRNA_SPLICING_MINOR_PATHWAY	0	1.52
Category members	GO Category	GO:0000375	RNA splicing, via transesterification reactions	Database	0.73
Category members	GO Category	GO:0005682	U5 snRNP	Database	0.57
Category members	GO Category	GO:0006396	RNA processing	Database	0.17
Category members	GO Category	GO:0005732	small nucleolar ribonucleoprotein complex	Database	0