bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: SH3RF1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SH3RF1 1 -0.818 2.280 -0.420

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SH3RF1 Phosphorylation S739 -0.818 _VS(ph)PPAS(ph)PTLEVELGSAELPLQGAVGPELPPGGGHGR_
SH3RF1 Phosphorylation S735 -0.929 _VS(ph)PPAS(ph)PTLEVELGSAELPLQGAVGPELPPGGGHGR_
SH3RF1 Phosphorylation T741 -1.041 _VS(ph)PPASPT(ph)LEVELGSAELPLQGAVGPELPPGGGHGR_

Background Information for SH3RF1:





Protein-protein Interactions for SH3RF1

Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in SH3RF1

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_MIZ IPR004181 0.13
Category members SH3_2 IPR011511 0.08
Category members SH3_domain IPR001452 0
Category members Znf_RING IPR001841 0
Category members Znf_C3HC4_RING-type IPR018957 0


Protein complexes (CORUM database) featuring SH3RF1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 3138 POSH-AKT2 complex Database 0.05
Category members Corum 1299 POSH-MLK3 complex Database 0


Categories featuring SH3RF1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0006915 apoptotic process Database 2.12
Category members GO Category GO:0030027 lamellipodium Database 1.77
Category members GO Category GO:0043066 negative regulation of apoptotic process Database 0.6
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0046328 regulation of JNK cascade Database 0.22
Category members GO Category GO:0016567 protein ubiquitination Database 0.07
Category members GO Category GO:0005078 MAP-kinase scaffold activity Database 0
Category members GO Category GO:0016874 ligase activity Database 0
Category members GO Category GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process Database 0
Category members GO Category GO:0046872 metal ion binding Database 0


© Copyright Svejstrup Laboratory 2015