bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: SDR42E2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SDR42E2 0 -0.620

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SDR42E2 Ubiquitylation K30 -0.620 _TQAKPTK(gl)AAR_

Background Information for SDR42E2:


Pubmed-SDR42E2 »
Uniprot-SDR42E2 »
Biogrid-SDR42E2 »
ProteomicsDB-SDR42E2 »

Tumorportal-SDR42E2 »
COSMIC-SDR42E2 »
GenomeRNAi-SDR42E2 »
Genecards-SDR42E2


Protein-protein Interactions for SDR42E2
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in SDR42E2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Epimerase_deHydtase_N IPR001509 0
Category members DH_sc/Rdtase_SDR IPR002198 0
Category members 3Beta_OHSteriod_DH/Estase IPR002225 0
Category members Polysac_CapD-like IPR003869 0
Category members dTDP_dehydrorham_reduct IPR005913 0
Category members NmrA-like IPR008030 0
Category members Male_sterile_NAD-bd IPR013120 0


Protein complexes (CORUM database) featuring SDR42E2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SDR42E2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Database 0.29
Category members GO Category GO:0006694 steroid biosynthetic process Database 0.29
Category members GO Category GO:0003824 catalytic activity Database 0.11
Category members GO Category GO:0009058 biosynthetic process Database 0.11
Category members GO Category GO:0044237 cellular metabolic process Database 0.08
Category members GO Category GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity Database 0
Category members GO Category GO:0008152 metabolic process Database 0
Category members GO Category GO:0008831 dTDP-4-dehydrorhamnose reductase activity Database 0
Category members GO Category GO:0016491 oxidoreductase activity Database 0
Category members GO Category GO:0045226 extracellular polysaccharide biosynthetic process Database 0
Category members GO Category GO:0050662 coenzyme binding Database 0
Category members GO Category GO:0055114 oxidation-reduction process Database 0


.

© Copyright Svejstrup Laboratory 2015