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Query: RNF13

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RNF13 0 2.001 -0.590 0.720
RNF13 0 2.001 0.180 -0.460

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RNF13 Ubiquitylation K273 1.281 _CVDPWLTK(gl)TK_

Background Information for RNF13:


Pubmed-RNF13 »
Uniprot-RNF13 »
Biogrid-RNF13 »
ProteomicsDB-RNF13 »

Tumorportal-RNF13 »
COSMIC-RNF13 »
GenomeRNAi-RNF13 »
Genecards-RNF13


Protein-protein Interactions for RNF13
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait NES Cat. description Hein, Mann, Cell 2015
Category members IP bait STAT5A Cat. description Hein, Mann, Cell 2015
Category members IP bait CLEC11A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MANSC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RNF13 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SPINT2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX12 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VIPR1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VTI1B Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RNF13
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_RING IPR001841 0
Category members Protease-assoc_domain IPR003137 0
Category members Znf_C3HC4_RING-type IPR018957 0


Protein complexes (CORUM database) featuring RNF13
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RNF13
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members GO Category GO:0005637 nuclear inner membrane Database 1.98
Category members GO Category GO:0005789 endoplasmic reticulum membrane Database 1.57
Category members GO Category GO:0005765 lysosomal membrane Database 0.82
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0004842 ubiquitin-protein ligase activity Database 0.24
Category members GO Category GO:0051865 protein autoubiquitination Database 0.18
Category members GO Category GO:0000139 Golgi membrane Database 0
Category members GO Category GO:0031902 late endosome membrane Database 0
Category members GO Category GO:0046872 metal ion binding Database 0


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