bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: RFTN1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RFTN1 0 3.093 0.340 -0.570 0.644

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RFTN1 Ubiquitylation K361 1.134 0.497 _K(gl)IQEAASQGLK_
RFTN1 Phosphorylation S413 0.717 0.101 _GDHAS(ph)LENEKPGTGDVCSAPAGR_

Background Information for RFTN1:





Protein-protein Interactions for RFTN1

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait GJB7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RFTN1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SDC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SLC25A41 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TGM5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait UNC119 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RFTN1

Domain name Domain Description TC-NER relevance -log10(p-value)


Protein complexes (CORUM database) featuring RFTN1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RFTN1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0043234 protein complex Database 2.73
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0005768 endosome Database 0.29
Category members GO Category GO:0034138 toll-like receptor 3 signaling pathway Database 0.28
Category members GO Category GO:0045121 membrane raft Database 0.11
Category members GO Category GO:0003725 double-stranded RNA binding Database 0.1
Category members GO Category GO:0033227 dsRNA transport Database 0
Category members GO Category GO:0043330 response to exogenous dsRNA Database 0


© Copyright Svejstrup Laboratory 2015