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Query: RBM39

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RBM39 0 2.183 0.300 -0.500 0.373 -0.027 -0.100 -0.040 -0.124

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RBM39 Ubiquitylation K119 0.803 _IGLPHSIK(gl)LSR_
RBM39 Phosphorylation S334 0.122 0.530 _TDASS(ph)ASSFLDSDELER_
RBM39 Phosphorylation S333 0.768 0.511 _TDAS(ph)SASSFLDSDELER_
RBM39 Phosphorylation S337 -0.224 -0.022 _TDASSASS(ph)FLDSDELER_
RBM39 Phosphorylation S117 -0.782 -0.233 _IGLPHS(ph)IK_
RBM39 Phosphorylation S97 0.076 -0.250 _YRS(ph)PYSGPK_
RBM39 Phosphorylation S136 -0.830 -0.414 _S(ph)PVREPIDNLTPEER_

Background Information for RBM39:


Pubmed-RBM39 »
Uniprot-RBM39 »
Biogrid-RBM39 »
ProteomicsDB-RBM39 »

Tumorportal-RBM39 »
COSMIC-RBM39 »
GenomeRNAi-RBM39 »
Genecards-RBM39


Protein-protein Interactions for RBM39
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait KCNK1 Cat. description Hein, Mann, Cell 2015
Category members IP bait LAP3 Cat. description Hein, Mann, Cell 2015
Category members IP bait SEC16A Cat. description Hein, Mann, Cell 2015
Category members IP bait JMJD6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RBM39
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RRM_dom IPR000504 4.34
Category members RRM_dom_euk IPR003954 0.18
Category members RBM39_SF IPR006509 0


Protein complexes (CORUM database) featuring RBM39
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 351 Spliceosome Database 9.3


Categories featuring RBM39
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members DDR Literature pubmedid:24332808 Marechal et al., 2014 RPA-mediated recruitment INF
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members DDR Literature pubmedid:TBD1_UV_decreased Elia et al, 2015 UV decreased acetylation events Elia et al. 10.54
Category members GO Category GO:0000166 nucleotide binding Database 5.91
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0006397 mRNA processing Database 3.76
Category members GO Category GO:0015630 microtubule cytoskeleton Database 1.34
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0005813 centrosome Database 0.75
Category members GO Category GO:0006396 RNA processing Database 0.17
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0


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