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Query: PRPF40B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PRPF40B 0 2.713 -1.060 1.470

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PRPF40B Phosphorylation S832 0.585 0.658 _ELQQAELPNRS(ph)PGFGIK_
PRPF40B Phosphorylation S764 0.312 0.245 _GS(ph)PSSHLLGADHGLR_

Background Information for PRPF40B:


Pubmed-PRPF40B »
Uniprot-PRPF40B »
Biogrid-PRPF40B »
ProteomicsDB-PRPF40B »

Tumorportal-PRPF40B »
COSMIC-PRPF40B »
GenomeRNAi-PRPF40B »
Genecards-PRPF40B


Protein-protein Interactions for PRPF40B
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait MYEF2 Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP6C Cat. description Hein, Mann, Cell 2015
Category members IP bait TNKS1BP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait PRPF40B Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in PRPF40B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members FF_domain IPR002713 1.23
Category members WW_dom IPR001202 1.15


Protein complexes (CORUM database) featuring PRPF40B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring PRPF40B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members Pathway Pathway_851 KEGG_SPLICEOSOME 0 7.94
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0006397 mRNA processing Database 3.76


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