bioLOGIC-db

bioLOGIC Data

Query: PFDN1

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
PFDN1	0	1.687	0.040	-0.360

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
PFDN1	Ubiquitylation	K10	0.055	0.702	_(ac)AAPVDLELK(gl)K_
PFDN1	Ubiquitylation	K11	0.290	0.616	_K(gl)AFTELQAK_
PFDN1	Ubiquitylation	K28	0.985		_VK(gl)LADIQIEQLNR_
PFDN1	Ubiquitylation	K97	-0.053		_IKELEQK(gl)K_
PFDN1	Ubiquitylation	K106	0.479		_SVK(gl)EAEDNIR_

ProteomicsDB-PFDN1 »

Protein-protein Interactions for PFDN1

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait CCT3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CCT4	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GEMIN5	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GNB1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait KIF21A	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PFDN2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RFWD3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TUBA3C;TUBA3E	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait VBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait WDR61	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait DCAF5	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GNB2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait KLHDC2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PFDN2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PFDN4	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PRKAG3	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait VBP1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in PFDN1

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	PFD_beta-like	IPR002777	0.31
Category members	Prefoldin	IPR009053	0

Protein complexes (CORUM database) featuring PFDN1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	112	Prefoldin complex	Database	0.27
Category members	Corum	33	Prefoldin	Database	0.27

Categories featuring PFDN1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Pathway	Pathway_11	REACTOME_METABOLISM_OF_PROTEINS	0	12.01
Category members	GO Category	GO:0044267	cellular protein metabolic process	Database	10.42
Category members	GO Category	GO:0006457	protein folding	Database	4.93
Category members	GO Category	GO:0051082	unfolded protein binding	Database	3.74
Category members	GO Category	GO:0030036	actin cytoskeleton organization	Database	1.08
Category members	Pathway	Pathway_742	REACTOME_PROTEIN_FOLDING	0	0.9
Category members	GO Category	GO:0007049	cell cycle	Database	0.69
Category members	GO Category	GO:0051084	'de novo' posttranslational protein folding	Database	0.63
Category members	GO Category	GO:0003700	sequence-specific DNA binding transcription factor activity	Database	0.63
Category members	Pathway	Pathway_1288	REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC	0	0.4
Category members	GO Category	GO:0016272	prefoldin complex	Database	0.15
Category members	GO Category	GO:0021549	cerebellum development	Database	0.14
Category members	GO Category	GO:0006355	regulation of transcription, DNA-dependent	Database	0
Category members	GO Category	GO:0021537	telencephalon development	Database	0
Category members	GO Category	GO:0042113	B cell activation	Database	0