bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: PAPD7

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PAPD7 1 2.650 -1.470 2.960

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PAPD7 Ubiquitylation K198 -0.310 _NFNYLK(gl)TGIR_

Background Information for PAPD7:





Protein-protein Interactions for PAPD7

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait PAPD7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RMND5A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in PAPD7

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Nucleotidyltransferase IPR002934 0.13
Category members PAP_assoc IPR002058 0


Protein complexes (CORUM database) featuring PAPD7

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring PAPD7

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0006302 double-strand break repair Database 4.62
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0007062 sister chromatid cohesion Database 0.69
Category members GO Category GO:0042493 response to drug Database 0.66
Category members Pathway Pathway_310 KEGG_RNA_DEGRADATION 0 0.26
Category members GO Category GO:0007076 mitotic chromosome condensation Database 0.01
Category members GO Category GO:0003887 DNA-directed DNA polymerase activity Database 0
Category members GO Category GO:0016779 nucleotidyltransferase activity Database 0
Category members GO Category GO:0046872 metal ion binding Database 0


© Copyright Svejstrup Laboratory 2015