bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: H1F0

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
H1F0 1 2.143 1.220 -1.230

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
H1F0 Ubiquitylation K59 2.143 _SHYK(gl)VGENADSQIK_

Background Information for H1F0:


Pubmed-H1F0 »
Uniprot-H1F0 »
Biogrid-H1F0 »
ProteomicsDB-H1F0 »

Tumorportal-H1F0 »
COSMIC-H1F0 »
GenomeRNAi-H1F0 »
Genecards-H1F0


Protein-protein Interactions for H1F0
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in H1F0
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Histone_H1/H5_H15 IPR005818 0.14
Category members Histone_H5 IPR005819 0.08


Protein complexes (CORUM database) featuring H1F0
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring H1F0
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0006334 nucleosome assembly Database 3.77
Category members GO Category GO:0006921 cellular component disassembly involved in execution phase of apoptosis Database 2.98
Category members Pathway Pathway_876 REACTOME_APOPTOTIC_EXECUTION_PHASE 0 2.5
Category members GO Category GO:0000786 nucleosome Database 2.41
Category members Pathway Pathway_837 REACTOME_APOPTOSIS 0 2.39
Category members GO Category GO:0006915 apoptotic process Database 2.12
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members Pathway Pathway_955 REACTOME_APOPTOSIS_INDUCED_DNA_FRAGMENTATION 0 0.51
Category members GO Category GO:0000790 nuclear chromatin Database 0.46
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0006309 apoptotic DNA fragmentation Database 0.26


.

© Copyright Svejstrup Laboratory 2015