bioLOGIC-db

bioLOGIC Data

Query: GEMIN4

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
GEMIN4	1	1.882	0.410	0.040				0.354
GEMIN4	1	1.882	0.410	0.040	-0.361	0.231
GEMIN4	1	1.882	0.410	0.040			-0.166	-0.019

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
GEMIN4	Phosphorylation	S205		1.824	_LRS(ph)DPDACPTMPLLAMLLR_

ProteomicsDB-GEMIN4 »

Protein-protein Interactions for GEMIN4

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait GEMIN5	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GEMIN7	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RRBP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SMN1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SNRNP70	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait C19orf75	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait CRYAB	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait DDX20	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait FZD10	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GEMIN6	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait OPRM1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SIP1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRNP70	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPE	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPF	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPG	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait STRAP	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait UXS1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in GEMIN4

	Domain name	Domain Description	TC-NER relevance -log10(p-value)

Protein complexes (CORUM database) featuring GEMIN4

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	1751	SMN complex	Database	0.37
Category members	Corum	156	Retrotranslocation complex	Database	0.32
Category members	Corum	3284	SMN complex (GEMIN5,2,3,4, SMN)	Database	0.23
Category members	Corum	1746	SMN containing complex	Database	0.19
Category members	Corum	1143	SMN complex	Database	0.14
Category members	Corum	1752	SMN complex	Database	0.11
Category members	Corum	1745	SMN complex	Database	0
Category members	Corum	1749	SMN-PolII-RHA complex	Database	0
Category members	Corum	1750	PPP4C-PPP4R2-Gemin3-Gemin4 complex	Database	0
Category members	Corum	3296	SMN complex (GEMIN5,4,3), SMN-independent intermediate	Database	0
Category members	Corum	824	Anti-SMN protein complex	Database	0
Category members	Corum	832	Anti-Sm protein complex	Database	0

Categories featuring GEMIN4

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	DDR Literature	pubmedid:24332808	Marechal et al., 2014 RPA-mediated recruitment		INF
Category members	Pathway	Pathway_771	REACTOME_METABOLISM_OF_RNA	0	INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0005829	cytosol	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	GO Category	GO:0016070	RNA metabolic process	Database	INF
Category members	GO Category	GO:0005730	nucleolus	Database	13.38
Category members	GO Category	GO:0005737	cytoplasm	Database	12.81
Category members	Pathway	Pathway_887	REACTOME_METABOLISM_OF_NON_CODING_RNA	0	4.38
Category members	GO Category	GO:0005681	spliceosomal complex	Database	3.88
Category members	GO Category	GO:0006364	rRNA processing	Database	2.47
Category members	GO Category	GO:0030532	small nuclear ribonucleoprotein complex	Database	0.15
Category members	GO Category	GO:0000387	spliceosomal snRNP assembly	Database	0.04
Category members	GO Category	GO:0034660	ncRNA metabolic process	Database	0