bioLOGIC-db

bioLOGIC Data

Query: CLNS1A

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
CLNS1A	0	0.453	-1.140	1.450		-0.181	-0.106

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
CLNS1A	Phosphorylation	S102	-0.365	-0.345	_FEEESKEPVADEEEEDS(ph)DDDVEPITEFR_

ProteomicsDB-CLNS1A »

Protein-protein Interactions for CLNS1A

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait GAR1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PRMT5	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SMN1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait WIZ	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ADCYAP1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait DDAH2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait EPB41L2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait FARP2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GAR1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait LSM6	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RBFOX2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RPL15	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RPS2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPE	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPF	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPG	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNRPN	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in CLNS1A

	Domain name	Domain Description	TC-NER relevance -log10(p-value)

Protein complexes (CORUM database) featuring CLNS1A

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	2838	AR coactivator complex	Database	0.06
Category members	Corum	833	6S methyltransferase complex	Database	0.06
Category members	Corum	837	20S methyltransferase complex	Database	0.06
Category members	Corum	819	20S methylosome-SmD complex	Database	0
Category members	Corum	825	JBP1-pICln complex	Database	0
Category members	Corum	832	Anti-Sm protein complex	Database	0
Category members	Corum	834	20S methylosome and RG-containing Sm protein complex	Database	0
Category members	Corum	835	6S methyltransferase and RG-containing Sm proteins complex	Database	0
Category members	Corum	836	20S methyltransferase core complex	Database	0

Categories featuring CLNS1A

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Pathway	Pathway_771	REACTOME_METABOLISM_OF_RNA	0	INF
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005829	cytosol	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	GO Category	GO:0016070	RNA metabolic process	Database	INF
Category members	Pathway	Pathway_887	REACTOME_METABOLISM_OF_NON_CODING_RNA	0	4.38
Category members	GO Category	GO:0005886	plasma membrane	Database	1.21
Category members	GO Category	GO:0005856	cytoskeleton	Database	0.63
Category members	GO Category	GO:0000387	spliceosomal snRNP assembly	Database	0.04
Category members	GO Category	GO:0006810	transport	Database	0
Category members	GO Category	GO:0006821	chloride transport	Database	0
Category members	GO Category	GO:0006884	cell volume homeostasis	Database	0
Category members	GO Category	GO:0008015	blood circulation	Database	0
Category members	GO Category	GO:0034660	ncRNA metabolic process	Database	0